RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GRIFINA4D1Z8 144 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 FRMD6-AS1P0C7T7 363 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 SAA1P0DJI8 122 aaPredicted RBP13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 RNASE2P10153 161 aaKnown RBP13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CEACAM8P31997 349 aaPredicted RBP13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 LINC00310P59036 64 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 SELENOVP59797 346 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 RTL8BQ17RB0 113 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 ZNF705AQ6ZN79 300 aaPredicted RBP13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 FKBP11Q9NYL4 201 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 BET1LQ9NYM9 111 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 V9GYV3 84 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 LRBAP50851 2863 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CRYBB3P26998 211 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR10J1P30954 320 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 TMEM30BQ3MIR4 351 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 ZNF833PQ6ZTB9 187 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 RND1Q92730 232 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 TMEM167BQ9NRX6 74 aa13.07□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 FCN3O75636 299 aa13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 KRTCAP3Q53RY4 240 aa13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR10W1Q8NGF6 305 aa13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR9G1Q8NH87 305 aa13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 SLC35E1Q96K37 410 aa13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 TECRQ9NZ01 308 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 USP9XQ93008 2570 aaPredicted RBP13.06□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR5G3P0C626 314 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CENPWQ5EE01 88 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 GFRALQ6UXV0 394 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 DCHS2Q6V1P9 2916 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 C11orf42Q8N5U0 333 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR1L8Q8NGR8 309 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 MIEN1Q9BRT3 115 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 MRPL18Q9H0U6 180 aaKnown RBP13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 LINC00312Q9Y6C7 94 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 hADV38S2A0JD32 116 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 HELTA6NFD8 242 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 TNFSF4P23510 183 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 ATP5IP56385 69 aaPredicted RBP13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 MMD2Q8IY49 270 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 PNKDQ8N490 385 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR1L6Q8NGR2 347 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR5B3Q8NH48 314 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 ORAOV1Q8WV07 137 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 C20orf144Q9BQM9 153 aa13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 MRPL20Q9BYC9 149 aaKnown RBP13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 POLR3KQ9Y2Y1 108 aaPredicted RBP13.05□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 GGTLC3B5MD39 225 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 UQCRFS1P47985 274 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CD69Q07108 199 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 NUP37Q8NFH4 326 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 PSMB11A5LHX3 300 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 SCGB1D1O95968 90 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR10J4P0C629 311 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 ESDP10768 282 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CCL8P80075 99 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 RPEL1Q2QD12 228 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 PQLC2Q6ZP29 291 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CMTM2Q8TAZ6 248 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 MS4A10Q96PG2 267 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 NDUFA4L2Q9NRX3 87 aa13.04□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 E7EUB6 86 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 GNG4P50150 75 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 PTTG1IPP53801 180 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 RANP62826 216 aaKnown RBP13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OSR1Q8TAX0 266 aaPredicted RBP13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 SLC25A33Q9BSK2 321 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 NAGKQ9UJ70 344 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 TENM4Q6N022 2769 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 H0YJW9 148 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 OR7C2O60412 319 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 IGLV2-8P01709 118 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CCL3L1P16619 93 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 IER3P46695 156 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 DOLPP1Q86YN1 238 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 C19orf24Q9BVV8 132 aa13.03□□□□□ -0.32
MSH5-SAPCD1-208ENST00000498473 CRISP2P16562 243 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 MORN5Q5VZ52 161 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR8I2Q8N0Y5 310 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ZCCHC24Q8N2G6 241 aaKnown RBP13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ST6GALNAC3Q8NDV1 305 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR5AN1Q8NGI8 311 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR2T6Q8NHC8 308 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 FAM57AQ8TBR7 257 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 FAM167A-AS1Q96KT0 104 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 RNASE7Q9H1E1 156 aaKnown RBP13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CENPEQ02224 2701 aa13.02□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CGB1A6NKQ9 187 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 F2Z2F3 143 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SERF1AO75920 110 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 C8orf88P0DMB2 117 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CHRNB4P30926 498 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 MEF2CQ06413 473 aaPredicted RBP13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM177Q53S58 311 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 Q6ZWC4 215 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 HARBI1Q96MB7 349 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OSTCQ9NRP0 149 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ARFGEF3Q5TH69 2177 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 LRRK2Q5S007 2527 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRE2 83 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms