RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 C11orf52Q96A22 123 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 FLYWCH2Q96CP2 140 aaKnown RBP11.97□□□□□ -0.49
USP4-203ENST00000415188 HARBI1Q96MB7 349 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 ABCA1O95477 2261 aa11.97□□□□□ -0.49
USP4-203ENST00000415188 GGCTO75223 188 aaKnown RBP11.96□□□□□ -0.49
USP4-203ENST00000415188 TYMSP04818 313 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 RNASE2P10153 161 aaKnown RBP11.96□□□□□ -0.49
USP4-203ENST00000415188 AREGP15514 252 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 CCL3L1P16619 93 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 NPPCP23582 126 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 S100A2P29034 98 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 DLX6P56179 175 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 RPL8P62917 257 aaKnown RBP11.96□□□□□ -0.49
USP4-203ENST00000415188 ERHP84090 104 aaKnown RBP11.96□□□□□ -0.49
USP4-203ENST00000415188 TMEM155Q4W5P6 130 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 OR10X1Q8NGY0 326 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 OR9G1Q8NH87 305 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 ABHD5Q8WTS1 349 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 H1FXQ92522 213 aaKnown RBP11.96□□□□□ -0.49
USP4-203ENST00000415188 CCL17Q92583 94 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 TNFRSF14Q92956 283 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 UHRF2Q96PU4 802 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 RNF2Q99496 336 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 NABP2Q9BQ15 211 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 COMMD5Q9GZQ3 224 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 NDUFA4L2Q9NRX3 87 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 WASHC3Q9Y3C0 194 aa11.96□□□□□ -0.49
USP4-203ENST00000415188 PHOX2AO14813 284 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 LINC00869P0C866 280 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 TRGC1P0CF51 173 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 DEFA4P12838 97 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 MC5RP33032 325 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 ATP5G3P48201 142 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 FAM3BP58499 235 aaPredicted RBP11.95□□□□□ -0.5
USP4-203ENST00000415188 UBE2G2P60604 165 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 LCN2P80188 198 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 LINC01551Q86U37 167 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 SSMEM1Q8WWF3 244 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 ST6GALNAC6Q969X2 333 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 MDFIQ99750 246 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 TMEM167BQ9NRX6 74 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 GAR1Q9NY12 217 aaKnown RBP11.95□□□□□ -0.5
USP4-203ENST00000415188 LY96Q9Y6Y9 160 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 IGHV1-69-2A0A0G2JMI3 117 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 PPP5D1E7EU14 171 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 DVL1O14640 695 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 CRLF1O75462 422 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 FCN3O75636 299 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 CD69Q07108 199 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 DNLZQ5SXM8 178 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 MRPL41Q8IXM3 137 aaKnown RBP11.95□□□□□ -0.5
USP4-203ENST00000415188 OR2T10Q8NGZ9 312 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 FRZBQ92765 325 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 TECRQ9NZ01 308 aaKnown RBP11.95□□□□□ -0.5
USP4-203ENST00000415188 CTSZQ9UBR2 303 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 FUT9Q9Y231 359 aa11.95□□□□□ -0.5
USP4-203ENST00000415188 A0A096LNT2 108 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 CD5LO43866 347 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 LY6HO94772 140 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 NDUFB4O95168 129 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 MYOD1P15172 320 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 SUB1P53999 127 aaKnown RBP eCLIP11.94□□□□□ -0.5
USP4-203ENST00000415188 TAS2R45P59539 299 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 VMA21Q3ZAQ7 101 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 CLEC2AQ6UVW9 174 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 LYPD2Q6UXB3 125 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 PQLC2Q6ZP29 291 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 SLC16A13Q7RTY0 426 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 ZCCHC24Q8N2G6 241 aaKnown RBP11.94□□□□□ -0.5
USP4-203ENST00000415188 RNASEH2CQ8TDP1 164 aaKnown RBP11.94□□□□□ -0.5
USP4-203ENST00000415188 MRPL32Q9BYC8 188 aaKnown RBP11.94□□□□□ -0.5
USP4-203ENST00000415188 YAE1D1Q9NRH1 226 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 PITPNC1Q9UKF7 332 aa11.94□□□□□ -0.5
USP4-203ENST00000415188 MDFIC2A0A1B0GVS7 189 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 C9JCJ5 164 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 RBP4P02753 201 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 OR5G3P0C626 314 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 LGALS7P47929 136 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 HLA-DRB5Q30154 266 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 TGIF2LXQ8IUE1 241 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 HIST3H2BBQ8N257 126 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 OR51M1Q9H341 326 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 ZNRD1Q9P1U0 126 aa11.93□□□□□ -0.5
USP4-203ENST00000415188 TRAV9-1A0A075B6T8 112 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 IGHV1-8P0DP01 117 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 GAMTQ14353 236 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 OR4X1Q8NH49 305 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 ACY3Q96HD9 319 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 TMEM133Q9H2Q1 129 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 SEPSECSQ9HD40 501 aaKnown RBP11.92□□□□□ -0.5
USP4-203ENST00000415188 NIT2Q9NQR4 276 aa11.92□□□□□ -0.5
USP4-203ENST00000415188 YTHDF2Q9Y5A9 579 aaKnown RBP11.92□□□□□ -0.5
USP4-203ENST00000415188 IFITM10A6NMD0 228 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 IGLV2-23P01705 113 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 OR10J1P30954 320 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 EFNA4P52798 201 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 FOXL1Q12952 345 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 COA6Q5JTJ3 125 aaKnown RBP11.91□□□□□ -0.5
USP4-203ENST00000415188 FAM78BQ5VT40 261 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 OR4P4Q8NGL7 312 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms