RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 NUDT11Q96G61 164 aa13.25□□□□□ -0.29
COL17A1-202ENST00000369733 KIR2DL4Q99706 377 aa13.25□□□□□ -0.29
COL17A1-202ENST00000369733 CD69Q07108 199 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 EBLN2Q6P2I7 272 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 OR5A1Q8NGJ0 315 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 NHP2Q9NX24 153 aaKnown RBP13.24□□□□□ -0.29
COL17A1-202ENST00000369733 MPDZO75970 2070 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 TCRBV4S1A1TA0A5B7 111 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 PRCDQ00LT1 54 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 SCGB3A1Q96QR1 104 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 MGST2Q99735 147 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 C3orf79P0CE67 100 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 PRSS8Q16651 343 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 IGHV3-23P01764 117 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 C1orf162Q8NEQ5 155 aaPredicted RBP13.24□□□□□ -0.29
COL17A1-202ENST00000369733 DOCK6Q96HP0 2047 aa13.24□□□□□ -0.29
COL17A1-202ENST00000369733 TRAV5A0A0B4J249 113 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 FOXH1O75593 365 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 NDUFA3O95167 84 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 SEC11AP67812 179 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 SEPSECSQ9HD40 501 aaKnown RBP13.23□□□□□ -0.29
COL17A1-202ENST00000369733 PLXNA3P51805 1871 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 IGHV1-69-2A0A0G2JMI3 117 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 A0A0G2JRQ6 117 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 NPIPB6E9PJ23 425 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 HBDP02042 147 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 TIMM23BQ5SRD1 257 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 TMEM170BQ5T4T1 132 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 NPPCP23582 126 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 OR2K2Q8NGT1 345 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 WDR90Q96KV7 1748 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 CACNG7P62955 275 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 LCN12Q6JVE5 192 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 MS4A6AQ9H2W1 248 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 POLR3KQ9Y2Y1 108 aaPredicted RBP13.23□□□□□ -0.29
COL17A1-202ENST00000369733 TPRP12270 2363 aaKnown RBP13.23□□□□□ -0.29
COL17A1-202ENST00000369733 PLAURQ03405 335 aa13.23□□□□□ -0.29
COL17A1-202ENST00000369733 IGHV3OR16-13A0A075B7E8 117 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 IGHV3-74A0A0B4J1X5 117 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 RALGAPA1Q6GYQ0 2036 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 LINC00312Q9Y6C7 94 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 MEF2CQ06413 473 aaPredicted RBP13.22□□□□□ -0.29
COL17A1-202ENST00000369733 TMEM42Q69YG0 159 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 PF4V1P10720 104 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 UBE2V1Q13404 147 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 FAM74A4Q5TZK3 123 aa13.22□□□□□ -0.29
COL17A1-202ENST00000369733 IGKV3D-15A0A087WSY6 115 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 M0R381 172 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 IGKV3-15P01624 115 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 ATP5G2Q06055 141 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 RNFT1Q5M7Z0 435 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 APOMO95445 188 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 CFHR1Q03591 330 aa13.21□□□□□ -0.29
COL17A1-202ENST00000369733 FOXF2Q12947 444 aa13.21□□□□□ -0.3
COL17A1-202ENST00000369733 LY96Q9Y6Y9 160 aa13.21□□□□□ -0.3
COL17A1-202ENST00000369733 RLFQ13129 1914 aa13.21□□□□□ -0.3
COL17A1-202ENST00000369733 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.2□□□□□ -0.3
COL17A1-202ENST00000369733 CCL21O00585 134 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 HSD52Q0P140 79 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 RASL11AQ6T310 242 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 SNHG12Q9BXW3 62 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 ZNF56Q15929 161 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 PRR31Q5SQ13 230 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 Q6ZRM9 215 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 OR5AN1Q8NGI8 311 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 ANAPC10Q9UM13 185 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 IGHV3-66A0A0C4DH42 116 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 EEF1AKMT3Q96AZ1 226 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 Q6ZS49 121 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 SIGMAR1Q99720 223 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 TSC2P49815 1807 aa13.2□□□□□ -0.3
COL17A1-202ENST00000369733 PFN1P07737 140 aaKnown RBP13.19□□□□□ -0.3
COL17A1-202ENST00000369733 FOXG1P55316 489 aaPredicted RBP13.19□□□□□ -0.3
COL17A1-202ENST00000369733 GGNQ86UU5 652 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 COQ2Q96H96 371 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 PTPRDP23468 1912 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 CASP8AP2Q9UKL3 1982 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 hDV102S1A0JD36 115 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 TGFAP01135 160 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 CCL3L1P16619 93 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 LOC105371242A0A075B767 164 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 TRBV6-6A0A0A6YYG2 114 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 PINLYPA6NC86 204 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 TMEM50AO95807 157 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 SCGB1A1P11684 91 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 CIRBPQ14011 172 aaKnown RBP13.19□□□□□ -0.3
COL17A1-202ENST00000369733 MPV17L2Q567V2 206 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 C21orf62Q9NYP8 219 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 PSG8Q9UQ74 426 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 SMAGPQ0VAQ4 97 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 C19orf54Q5BKX5 351 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 OR10W1Q8NGF6 305 aa13.19□□□□□ -0.3
COL17A1-202ENST00000369733 PSPNO60542 156 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 E9PLN8 166 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 FDCSPQ8NFU4 85 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 MDC1Q14676 2089 aaKnown RBP13.18□□□□□ -0.3
COL17A1-202ENST00000369733 IGHV3-49A0A0A0MS15 119 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 DPM2O94777 84 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 SAMD5Q5TGI4 173 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 DYNLRB2Q8TF09 96 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms