RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 LYNX1G3V0Z9 82 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 REG1AP05451 166 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 LYNX1P0DP58 116 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 OR5I1Q13606 314 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 LINC01560Q8TB33 94 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 NPIPB3Q92617 1050 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 MRPL32Q9BYC8 188 aaKnown RBP17.56■□□□□ 0.4
SHMT1-202ENST00000352886 TRAV5A0A0B4J249 113 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 A0A1W2PPI3 338 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 PPOXP50336 477 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 SUMO1P63165 101 aaKnown RBP17.56■□□□□ 0.4
SHMT1-202ENST00000352886 SLC25A2Q9BXI2 301 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 DNAJC4Q9NNZ3 241 aa17.56■□□□□ 0.4
SHMT1-202ENST00000352886 ERVFC1-1P60608 527 aa17.55■□□□□ 0.4
SHMT1-202ENST00000352886 PRB3Q04118 309 aaPredicted RBP17.55■□□□□ 0.4
SHMT1-202ENST00000352886 DDTP30046 118 aa17.55■□□□□ 0.4
SHMT1-202ENST00000352886 SSX2Q16385 188 aa17.55■□□□□ 0.4
SHMT1-202ENST00000352886 MRGPRG-AS1Q2M3A8 158 aa17.55■□□□□ 0.4
SHMT1-202ENST00000352886 FAM167A-AS1Q96KT0 104 aa17.55■□□□□ 0.4
SHMT1-202ENST00000352886 RALYQ9UKM9 306 aaKnown RBP17.55■□□□□ 0.4
SHMT1-202ENST00000352886 A0A1W2PRE2 83 aa17.54■□□□□ 0.4
SHMT1-202ENST00000352886 LGALS7P47929 136 aa17.54■□□□□ 0.4
SHMT1-202ENST00000352886 JOSD1Q15040 202 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-202ENST00000352886 MRPL36Q9P0J6 103 aaKnown RBP17.54■□□□□ 0.4
SHMT1-202ENST00000352886 UBE2L3P68036 154 aaKnown RBP17.53■□□□□ 0.4
SHMT1-202ENST00000352886 OR5AU1Q8NGC0 362 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 RNF2Q99496 336 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 MALRD1Q5VYJ5 2156 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 IGKV1D-37A0A075B6S9 117 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 IGHV2-26A0A0B4J1V2 119 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 FAM90A27PA6NNH2 459 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 COX7A2P2O60397 106 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 GZMBP10144 247 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 OR5R1Q8NH85 324 aa17.53■□□□□ 0.4
SHMT1-202ENST00000352886 TCRBV4S1A1TA0A5B7 111 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 ADMP35318 185 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 YPEL3P61236 119 aaPredicted RBP17.52■□□□□ 0.4
SHMT1-202ENST00000352886 PKIAP61925 76 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 PRO1933Q9H354 126 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 V9GYV3 84 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 GRNP28799 593 aaKnown RBP17.52■□□□□ 0.4
SHMT1-202ENST00000352886 C10orf113Q5VZT2 155 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 MUC15Q8N387 334 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 TMEM18Q96B42 140 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 ZNF355PQ9NSJ1 428 aa17.52■□□□□ 0.4
SHMT1-202ENST00000352886 TRAV9-1A0A075B6T8 112 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 CBLN1P23435 193 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 RPEL1Q2QD12 228 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 MMD2Q8IY49 270 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 TNFRSF14Q92956 283 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 RELNP78509 3460 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 IGLV1-47P01700 117 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 CNTFRP26992 372 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 TIGITQ495A1 244 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 HCP5Q6MZN7 132 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 PATE2Q6UY27 113 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 OR1L4Q8NGR5 311 aa17.51■□□□□ 0.39
SHMT1-202ENST00000352886 A0A1B0GUS0 222 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 IGLC7A0M8Q6 106 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 PYYP10082 97 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 CASP6P55212 293 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 LGALS4P56470 323 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 ZNF841Q6ZN19 808 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 GBGT1Q8N5D6 347 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 THAP8Q8NA92 274 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 RNASE7Q9H1E1 156 aaKnown RBP17.5■□□□□ 0.39
SHMT1-202ENST00000352886 PRRX1P54821 245 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 BPIFB3P59826 476 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 TNXAQ16473 311 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 TEX45Q8NA69 505 aa17.5■□□□□ 0.39
SHMT1-202ENST00000352886 SIAH2O43255 324 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 APELAP0DMC3 54 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 MISP3Q96FF7 219 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 RBM14Q96PK6 669 aaKnown RBP17.49■□□□□ 0.39
SHMT1-202ENST00000352886 SELENOTP62341 195 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 RUSC1-AS1Q66K80 236 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 TMEM256Q8N2U0 113 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 C2orf88Q9BSF0 95 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 PAXXQ9BUH6 204 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 INSIG2Q9Y5U4 225 aa17.49■□□□□ 0.39
SHMT1-202ENST00000352886 TSTD3H0UI37 97 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 RPL27AP46776 148 aaKnown RBP17.48■□□□□ 0.39
SHMT1-202ENST00000352886 MRPL41Q8IXM3 137 aaKnown RBP17.48■□□□□ 0.39
SHMT1-202ENST00000352886 OR8I2Q8N0Y5 310 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 CLEC7AQ9BXN2 247 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 TPRP12270 2363 aaKnown RBP17.48■□□□□ 0.39
SHMT1-202ENST00000352886 IGHV1-3A0A0C4DH29 117 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 BUB1B-PAK6H3BSN5 160 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 IGLV2-8P01709 118 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 CA7P43166 264 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 C19orf35Q6ZS72 473 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 OR1L6Q8NGR2 347 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 IGF2BP2-AS1Q96M15 143 aa17.48■□□□□ 0.39
SHMT1-202ENST00000352886 GRIFINA4D1Z8 144 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 MOSP00540 346 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 GCGP01275 180 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 MFAP2P55001 183 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 FXYD3Q14802 87 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 MRPL18Q9H0U6 180 aaKnown RBP17.47■□□□□ 0.39
SHMT1-202ENST00000352886 PPIAL4CA0A0B4J2A2 164 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms