RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 WDR86Q86TI4 376 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 ZFP30Q9Y2G7 519 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 LAMTOR2Q9Y2Q5 125 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 HILPDAQ9Y5L2 63 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 LY96Q9Y6Y9 160 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 INTS1Q8N201 2190 aaKnown RBP12.17□□□□□ -0.46
TCOF1-201ENST00000323668 FOXH1O75593 365 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 COTL1Q14019 142 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 PET117Q6UWS5 81 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 CA1P00915 261 aaPredicted RBP12.16□□□□□ -0.46
TCOF1-201ENST00000323668 TYMSP04818 313 aa12.16□□□□□ -0.46
TCOF1-201ENST00000323668 TMEM97Q5BJF2 176 aa12.16□□□□□ -0.46
TCOF1-201ENST00000323668 FAM53AQ6NSI3 398 aaPredicted RBP12.16□□□□□ -0.46
TCOF1-201ENST00000323668 OR10W1Q8NGF6 305 aa12.16□□□□□ -0.46
TCOF1-201ENST00000323668 OR4A5Q8NH83 315 aa12.16□□□□□ -0.46
TCOF1-201ENST00000323668 RPP21Q9H633 154 aaKnown RBP12.16□□□□□ -0.46
TCOF1-201ENST00000323668 AP5S1Q9NUS5 200 aa12.16□□□□□ -0.46
TCOF1-201ENST00000323668 IGKV1D-17A0A075B6S4 117 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 C2orf83Q53S99 150 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 RNFT1Q5M7Z0 435 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 OR10AG1Q8NH19 301 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 CLEC7AQ9BXN2 247 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 C17orf100A8MU93 164 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 CCDC144NLQ6NUI1 221 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 PCNTO95613 3336 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 OR4C46A6NHA9 309 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 IGKV3-15P01624 115 aa12.15□□□□□ -0.46
TCOF1-201ENST00000323668 FGF23Q9GZV9 251 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-201ENST00000323668 RALYQ9UKM9 306 aaKnown RBP12.15□□□□□ -0.46
TCOF1-201ENST00000323668 SOX21Q9Y651 276 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-201ENST00000323668 PPIAL4CA0A0B4J2A2 164 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 PPIAL4GP0DN37 164 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 LEMD1Q68G75 181 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 SSBP4Q9BWG4 385 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-201ENST00000323668 UFC1Q9Y3C8 167 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 TCRBV4S1A1TA0A5B7 111 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 CKS2P33552 79 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 EPDR1Q9UM22 224 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 TRAV5A0A0B4J249 113 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 KRTAP27-1Q3LI81 207 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 IGHV1-69-2A0A0G2JMI3 117 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 K7ERU9 68 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 BMI1P35226 326 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 GNG5P63218 68 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 TMEM116Q8NCL8 245 aa12.14□□□□□ -0.47
TCOF1-201ENST00000323668 COL25A1Q9BXS0 654 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-201ENST00000323668 GOSR1O95249 250 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 OR2T8A6NH00 312 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 CX3CL1P78423 397 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 TWIST1Q15672 202 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 RBPMS2Q6ZRY4 209 aaKnown RBP12.13□□□□□ -0.47
TCOF1-201ENST00000323668 IGHV1-46P01743 117 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 MYOD1P15172 320 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 TCF24Q7RTU0 167 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 FMC1Q96HJ9 113 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 A0A1B0GUT8 65 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 MFAP4P55083 255 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 ZCCHC24Q8N2G6 241 aaKnown RBP12.13□□□□□ -0.47
TCOF1-201ENST00000323668 SLC25A33Q9BSK2 321 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 SLC25A15Q9Y619 301 aa12.13□□□□□ -0.47
TCOF1-201ENST00000323668 IL4P05112 153 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 NMUP48645 174 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 FBXL15Q9H469 300 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 SPTAN1Q13813 2472 aaKnown RBP12.12□□□□□ -0.47
TCOF1-201ENST00000323668 TRAV30A0A087WSZ9 112 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 F2RL2O00254 374 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 TCTAP57738 103 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 Q9H3A6 140 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 A0A1B0GUS0 222 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 DENND4AQ7Z401 1863 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 SMIM17P0DL12 118 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 CDPF1Q6NVV7 123 aa12.12□□□□□ -0.47
TCOF1-201ENST00000323668 CENPVQ7Z7K6 275 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-201ENST00000323668 TSKUQ8WUA8 353 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 TRAV9-2A0A087WT02 112 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 C10orf55Q5SWW7 151 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 NUDT3O95989 172 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 IGHG3P01860 377 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 RPL7P18124 248 aaKnown RBP12.11□□□□□ -0.47
TCOF1-201ENST00000323668 TFPI2P48307 235 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 ARF6P62330 175 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 RPL24P83731 157 aaKnown RBP12.11□□□□□ -0.47
TCOF1-201ENST00000323668 TMEM136Q6ZRR5 245 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 NUDT10Q8NFP7 164 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 NUDT11Q96G61 164 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 GAGE10A6NGK3 116 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 BSPH1Q075Z2 132 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 PNKDQ8N490 385 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 ST6GALNAC6Q969X2 333 aa12.11□□□□□ -0.47
TCOF1-201ENST00000323668 GPX1P07203 203 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 CRIP3Q6Q6R5 217 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 EREGO14944 169 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 VDAC2P45880 294 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-201ENST00000323668 UQCRFS1P47985 274 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 PCP4P48539 62 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 FNDC10F2Z333 226 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 CDX4O14627 284 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-201ENST00000323668 ST6GALNAC3Q8NDV1 305 aa12.1□□□□□ -0.47
TCOF1-201ENST00000323668 LOC102724200A0A096LPH7 203 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-201ENST00000323668 Q6ZR03 302 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms