RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PPP1R14DQ9NXH3 145 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 SAA2-SAA4A0A096LPE2 208 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 CIDEAO60543 219 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 HSBP1O75506 76 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 SAA2P0DJI9 122 aaPredicted RBP7.12□□□□□ -1.27
USP40-203ENST00000427112 NPY1RP25929 384 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 GCHFRP30047 84 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ARL3P36405 182 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ERVK11-1P61568 191 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 EFNB3Q15768 340 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ZNF718Q3SXZ3 478 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ACTL10Q5JWF8 245 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 MMD2Q8IY49 270 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 RNF2Q99496 336 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 AGMATQ9BSE5 352 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 LINC00470Q9BZP3 86 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 CTDSP1Q9GZU7 261 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 MEGF9Q9H1U4 602 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 SLC35D1Q9NTN3 355 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 DIRC3C9JPN6 131 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ZNF138P52744 262 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 MRPS11P82912 194 aaKnown RBP7.12□□□□□ -1.27
USP40-203ENST00000427112 RNASE8Q8TDE3 154 aaKnown RBP7.12□□□□□ -1.27
USP40-203ENST00000427112 CCL17Q92583 94 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 P2RX4Q99571 388 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ELOVL5Q9NYP7 299 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 CSPG4Q6UVK1 2322 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 CORTO00230 105 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 KIR2DL2P43627 348 aaPredicted RBP7.12□□□□□ -1.27
USP40-203ENST00000427112 GNG4P50150 75 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 ZNF146Q15072 292 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 MORN2Q502X0 79 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 TPTE2P1Q5T6R2 138 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 GNB4Q9HAV0 340 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 MBNL3Q9NUK0 354 aaKnown RBP7.12□□□□□ -1.27
USP40-203ENST00000427112 ZNF292O60281 2723 aa7.12□□□□□ -1.27
USP40-203ENST00000427112 SRRM4A7MD48 611 aaKnown RBP7.11□□□□□ -1.27
USP40-203ENST00000427112 E7EUB6 86 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 LYNX1G3V0Z9 82 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 DLL1O00548 723 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 LYNX1P0DP58 116 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 MAS1LP35410 378 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 CT45A1Q5HYN5 189 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 GCSAMQ8N6F7 178 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 KLHDC1Q8N7A1 406 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 CT45A3Q8NHU0 189 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 TAAR6Q96RI8 345 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 CXXC4Q9H2H0 198 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 GP6Q9HCN6 339 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 PTPRQQ9UMZ3 2332 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 HELTA6NFD8 242 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 ZNF891A8MT65 544 aaPredicted RBP7.11□□□□□ -1.27
USP40-203ENST00000427112 TMEM250H0YL14 139 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 J3QR06 171 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 GFRA3O60609 400 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 CNIH1O95406 144 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 WNT2P09544 360 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 PPOXP50336 477 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 FXYD7P58549 80 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 SLC35E4Q6ICL7 350 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 RNASEKQ6P5S7 137 aaKnown RBP7.11□□□□□ -1.27
USP40-203ENST00000427112 SLC24A4Q8NFF2 622 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 NUDT10Q8NFP7 164 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 GUCD1Q96NT3 240 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 FBXL7Q9UJT9 491 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 TP53TG3Q9ULZ0 132 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 WDR83OSQ9Y284 106 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 SORL1Q92673 2214 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 IGHV2OR16-5A0A0B4J2B6 119 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 IGHV1-18A0A0C4DH31 117 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 K7EM74 188 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 RELBQ01201 579 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 SPATA45Q537H7 98 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 STUMQ69YW2 141 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 SP5Q6BEB4 398 aaPredicted RBP7.11□□□□□ -1.27
USP40-203ENST00000427112 MOB1BQ7L9L4 216 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 OR5AU1Q8NGC0 362 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 CALYQ9NYX4 217 aa7.11□□□□□ -1.27
USP40-203ENST00000427112 TBL2Q9Y4P3 447 aaKnown RBP7.11□□□□□ -1.27
USP40-203ENST00000427112 IGKV1OR2-108A0A075B7D4 117 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 IGHV3-35A0A0C4DH35 117 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 PLP1P60201 277 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 Q6ZS49 121 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 WDR31Q8NA23 367 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 NABP2Q9BQ15 211 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 CLEC5AQ9NY25 188 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 OR51B2Q9Y5P1 312 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 CLEC3BP05452 202 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 TEPPQ6URK8 271 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 FER1L6-AS2Q96M78 137 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 M0R296 226 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 CDX4O14627 284 aaPredicted RBP7.1□□□□□ -1.27
USP40-203ENST00000427112 CD59P13987 128 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 OPRK1P41145 380 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 MFAP2P55001 183 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 RPL8P62917 257 aaKnown RBP7.1□□□□□ -1.27
USP40-203ENST00000427112 RUSC1-AS1Q66K80 236 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 Q8IYB0 196 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 Q8N7P7 452 aa7.1□□□□□ -1.27
USP40-203ENST00000427112 ANAPC16Q96DE5 110 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms