RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 TREML4Q6UXN2 200 aa17.25■□□□□ 0.35
HOXD4-201ENST00000306324 EEF1AKMT3Q96AZ1 226 aa17.25■□□□□ 0.35
HOXD4-201ENST00000306324 PINX1Q96BK5 328 aaKnown RBP17.25■□□□□ 0.35
HOXD4-201ENST00000306324 CXorf58Q96LI9 332 aa17.25■□□□□ 0.35
HOXD4-201ENST00000306324 MED6O75586 246 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 HSPB1P04792 205 aaKnown RBP17.24■□□□□ 0.35
HOXD4-201ENST00000306324 NKX2-1P43699 371 aaPredicted RBP17.24■□□□□ 0.35
HOXD4-201ENST00000306324 ZBTB8BQ8NAP8 495 aaPredicted RBP17.24■□□□□ 0.35
HOXD4-201ENST00000306324 SLC24A4Q8NFF2 622 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 PEF1Q9UBV8 284 aaKnown RBP17.24■□□□□ 0.35
HOXD4-201ENST00000306324 LINC01619G3V211 115 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 SCGB1D2O95969 90 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 TRBV12-3P01733 135 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 IAPPP10997 89 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 OR4D5Q8NGN0 318 aa17.24■□□□□ 0.35
HOXD4-201ENST00000306324 RANGRFQ9HD47 186 aaPredicted RBP17.24■□□□□ 0.35
HOXD4-201ENST00000306324 SYNGR2O43760 224 aa17.23■□□□□ 0.35
HOXD4-201ENST00000306324 SSNA1O43805 119 aa17.23■□□□□ 0.35
HOXD4-201ENST00000306324 IFNA10P01566 189 aa17.23■□□□□ 0.35
HOXD4-201ENST00000306324 FHL3Q13643 280 aa17.23■□□□□ 0.35
HOXD4-201ENST00000306324 BSXQ3C1V8 233 aa17.23■□□□□ 0.35
HOXD4-201ENST00000306324 GSG1LQ6UXU4 331 aa17.23■□□□□ 0.35
HOXD4-201ENST00000306324 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.22■□□□□ 0.35
HOXD4-201ENST00000306324 TRBV7-1A0A0A6YYK4 115 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 K7EIM0 57 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 WRBO00258 174 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 GOSR2O14653 212 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 OR8U8P0C7N1 319 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 ID3Q02535 119 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 CLEC19AQ6UXS0 136 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 VN1R17PQ8TDU5 208 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 SCARB1Q8WTV0 552 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 CCDC140Q96MF4 163 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 U3KQ87 197 aa17.22■□□□□ 0.35
HOXD4-201ENST00000306324 NOTCH3Q9UM47 2321 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 CORTO00230 105 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 MT-CO2P00403 227 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 CD33P20138 364 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 NPY1RP25929 384 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 SLURP1P55000 103 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 POLR2GP62487 172 aaKnown RBP eCLIP17.21■□□□□ 0.35
HOXD4-201ENST00000306324 C2orf83Q53S99 150 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 LINC00482Q8N8I6 264 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 ZNF502Q8TBZ5 544 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 ALG5Q9Y673 324 aa17.21■□□□□ 0.35
HOXD4-201ENST00000306324 MGAM2Q2M2H8 2515 aa17.21■□□□□ 0.34
HOXD4-201ENST00000306324 C7orf66A4D0T2 115 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 PPP5D1E7EU14 171 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 I3L2K1 104 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 IGHV3-48P01763 117 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 FAM209BQ5JX69 171 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 UBAC2Q8NBM4 344 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 C2orf50Q96LR7 162 aa17.2■□□□□ 0.34
HOXD4-201ENST00000306324 CIB3Q96Q77 187 aaPredicted RBP17.2■□□□□ 0.34
HOXD4-201ENST00000306324 SSSCA1O60232 199 aa17.19■□□□□ 0.34
HOXD4-201ENST00000306324 CLEC3BP05452 202 aa17.19■□□□□ 0.34
HOXD4-201ENST00000306324 OPRK1P41145 380 aa17.19■□□□□ 0.34
HOXD4-201ENST00000306324 OXA1LQ15070 435 aa17.19■□□□□ 0.34
HOXD4-201ENST00000306324 TMEM170AQ8WVE7 144 aa17.19■□□□□ 0.34
HOXD4-201ENST00000306324 C21orf62Q9NYP8 219 aa17.19■□□□□ 0.34
HOXD4-201ENST00000306324 SIX6O95475 246 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 ZP3P21754 424 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 HOXD3P31249 432 aaPredicted RBP17.18■□□□□ 0.34
HOXD4-201ENST00000306324 GPR183P32249 361 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 RPEL1Q2QD12 228 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 PVRIGQ6DKI7 326 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 NOXA1Q86UR1 476 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 ZC4H2Q9NQZ6 224 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 PAIP2BQ9ULR5 123 aaKnown RBP17.18■□□□□ 0.34
HOXD4-201ENST00000306324 BMPR1BO00238 502 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 MBPP02686 304 aaPredicted RBP17.18■□□□□ 0.34
HOXD4-201ENST00000306324 ARL3P36405 182 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 Q56UQ5 140 aa17.18■□□□□ 0.34
HOXD4-201ENST00000306324 OR2T8A6NH00 312 aa17.17■□□□□ 0.34
HOXD4-201ENST00000306324 IFNA4P05014 189 aa17.17■□□□□ 0.34
HOXD4-201ENST00000306324 RNASEH2CQ8TDP1 164 aaKnown RBP17.17■□□□□ 0.34
HOXD4-201ENST00000306324 DCUN1D4Q92564 292 aa17.17■□□□□ 0.34
HOXD4-201ENST00000306324 DLX4Q92988 240 aaPredicted RBP17.17■□□□□ 0.34
HOXD4-201ENST00000306324 LSM5Q9Y4Y9 91 aaKnown RBP17.17■□□□□ 0.34
HOXD4-201ENST00000306324 H3BP45 60 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 MFAP4P55083 255 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 RPP30P78346 268 aaKnown RBP17.16■□□□□ 0.34
HOXD4-201ENST00000306324 MLANAQ16655 118 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 SPANXN5Q5MJ07 72 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 ACSM6Q6P461 480 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 WFDC9Q8NEX5 89 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 FNDC4Q9H6D8 234 aaPredicted RBP17.16■□□□□ 0.34
HOXD4-201ENST00000306324 MGAT4CQ9UBM8 478 aa17.16■□□□□ 0.34
HOXD4-201ENST00000306324 GGCTO75223 188 aaKnown RBP17.15■□□□□ 0.34
HOXD4-201ENST00000306324 LY86O95711 162 aa17.15■□□□□ 0.34
HOXD4-201ENST00000306324 ATP5IP56385 69 aaPredicted RBP17.15■□□□□ 0.34
HOXD4-201ENST00000306324 S100A10P60903 97 aa17.15■□□□□ 0.34
HOXD4-201ENST00000306324 RAB11AP62491 216 aa17.15■□□□□ 0.34
HOXD4-201ENST00000306324 PSENENQ9NZ42 101 aa17.15■□□□□ 0.34
HOXD4-201ENST00000306324 RCL1Q9Y2P8 373 aaKnown RBP17.15■□□□□ 0.34
HOXD4-201ENST00000306324 RPS10-NUDT3A0A1W2PQS6 291 aa17.14■□□□□ 0.33
HOXD4-201ENST00000306324 C15orf62A8K5M9 175 aa17.14■□□□□ 0.33
HOXD4-201ENST00000306324 OVOL1O14753 267 aa17.14■□□□□ 0.33
HOXD4-201ENST00000306324 TGOLN2O43493 480 aa17.14■□□□□ 0.33
HOXD4-201ENST00000306324 OR2C1O95371 312 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms