RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TBC1D28Q2M2D7 210 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 DMRTA1Q5VZB9 504 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 PRSS46E5RG02 174 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 LGALS4P56470 323 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 Q8N976 141 aa15.28■□□□□ 0.04
CCDC3-201ENST00000378825 CGAP01215 116 aa15.27■□□□□ 0.04
CCDC3-201ENST00000378825 GCHFRP30047 84 aa15.27■□□□□ 0.04
CCDC3-201ENST00000378825 C1orf229Q6ZS94 237 aaPredicted RBP15.27■□□□□ 0.04
CCDC3-201ENST00000378825 DOLPP1Q86YN1 238 aa15.27■□□□□ 0.04
CCDC3-201ENST00000378825 GCNT2Q8N0V5 402 aa15.27■□□□□ 0.04
CCDC3-201ENST00000378825 TAAR6Q96RI8 345 aa15.27■□□□□ 0.04
CCDC3-201ENST00000378825 ZPBPQ9BS86 351 aa15.27■□□□□ 0.04
CCDC3-201ENST00000378825 OPRK1P41145 380 aa15.27■□□□□ 0.03
CCDC3-201ENST00000378825 MMDQ15546 238 aa15.27■□□□□ 0.03
CCDC3-201ENST00000378825 FBXW9Q5XUX1 488 aa15.27■□□□□ 0.03
CCDC3-201ENST00000378825 MMD2Q8IY49 270 aa15.27■□□□□ 0.03
CCDC3-201ENST00000378825 RNASE7Q9H1E1 156 aaKnown RBP15.27■□□□□ 0.03
CCDC3-201ENST00000378825 GFRA3O60609 400 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 CXorf1O96002 111 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 DUTP33316 252 aaKnown RBP15.26■□□□□ 0.03
CCDC3-201ENST00000378825 EFNB3Q15768 340 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 TMEM183BQ1AE95 376 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 SLC35E4Q6ICL7 350 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 LEAP2Q969E1 77 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 HES4Q9HCC6 221 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 AGFG2O95081 481 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 IL6RP08887 468 aaPredicted RBP15.26■□□□□ 0.03
CCDC3-201ENST00000378825 CD59P13987 128 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 MEOX1P50221 254 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 MRPS11P82912 194 aaKnown RBP15.26■□□□□ 0.03
CCDC3-201ENST00000378825 TMEM164Q5U3C3 297 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 MOB3BQ86TA1 216 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 OR4P4Q8NGL7 312 aa15.26■□□□□ 0.03
CCDC3-201ENST00000378825 KLF14Q8TD94 323 aaPredicted RBP15.26■□□□□ 0.03
CCDC3-201ENST00000378825 HEATR1Q9H583 2144 aaKnown RBP15.26■□□□□ 0.03
CCDC3-201ENST00000378825 CACNA1HO95180 2353 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 WISP2O76076 250 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 VDAC2P45880 294 aaPredicted RBP15.25■□□□□ 0.03
CCDC3-201ENST00000378825 PAFAH1B2P68402 229 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 PRR31Q5SQ13 230 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 Q6ZVH6 145 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 EAF1Q96JC9 268 aaPredicted RBP15.25■□□□□ 0.03
CCDC3-201ENST00000378825 V9GYV3 84 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 M0R1X1 148 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 PMCHP20382 165 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 ACP7Q6ZNF0 438 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 STPG3Q8N7X2 389 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 OR4A16Q8NH70 328 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 BTF3L4Q96K17 158 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 DCAF16Q9NXF7 216 aa15.25■□□□□ 0.03
CCDC3-201ENST00000378825 TBL2Q9Y4P3 447 aaKnown RBP15.25■□□□□ 0.03
CCDC3-201ENST00000378825 SP9P0CG40 484 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 ZNF134P52741 427 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 TMEM249Q2WGJ8 235 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 MIR17HGQ75NE6 70 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 UHRF2Q96PU4 802 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 M0QZK8 103 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 CDX4O14627 284 aaPredicted RBP15.24■□□□□ 0.03
CCDC3-201ENST00000378825 TNFSF15O95150 251 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 GPR12P47775 334 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 ATOH7Q8N100 152 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 FAM19A2Q8N3H0 131 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 HSD17B10Q99714 261 aaKnown RBP15.24■□□□□ 0.03
CCDC3-201ENST00000378825 ABI3Q9P2A4 366 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 DMXL1Q9Y485 3027 aa15.24■□□□□ 0.03
CCDC3-201ENST00000378825 TRAV34A0A0B4J273 112 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 ESDP10768 282 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 SFTPCP11686 197 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 GATA2P23769 480 aaPredicted RBP15.23■□□□□ 0.03
CCDC3-201ENST00000378825 MAJINQ3KP22 176 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 RNFT1Q5M7Z0 435 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 WDR82Q6UXN9 313 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 NAT8BQ9UHF3 227 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 PCNX2A6NKB5 2137 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 DIRC3C9JPN6 131 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 C15orf65H3BRN8 121 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 CA1P00915 261 aaPredicted RBP15.23■□□□□ 0.03
CCDC3-201ENST00000378825 GPX1P07203 203 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 CRYBB3P26998 211 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 CD177Q8N6Q3 437 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 WNT10AQ9GZT5 417 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 IGFBP2P18065 325 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 RANP62826 216 aaKnown RBP15.23■□□□□ 0.03
CCDC3-201ENST00000378825 RELBQ01201 579 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 CENPWQ5EE01 88 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 PQLC2Q6ZP29 291 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 SIGLECL1Q8N7X8 197 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 GNG12Q9UBI6 72 aa15.23■□□□□ 0.03
CCDC3-201ENST00000378825 LSM4Q9Y4Z0 139 aaKnown RBP15.23■□□□□ 0.03
CCDC3-201ENST00000378825 IQCF6A8MYZ5 107 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 SP1P08047 785 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 IGHV1-2P23083 117 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 AMTP48728 403 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 FABP6P51161 128 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 RPEL1Q2QD12 228 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 MRPL54Q6P161 138 aaKnown RBP15.22■□□□□ 0.03
CCDC3-201ENST00000378825 STPG4Q8N801 248 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 FAM216AQ8WUB2 273 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 NRN1Q9NPD7 142 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 SPRR3Q9UBC9 169 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms