RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 ZNF826PQ6ZT77 177 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 COPS9Q8WXC6 57 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 PCM1Q15154 2024 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 TMEM229AB2RXF0 380 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 TMEM50AO95807 157 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 RNASE7Q9H1E1 156 aaKnown RBP13.8□□□□□ -0.2
SHANK1-204ENST00000391814 TRAV9-2A0A087WT02 112 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 FAM27BQ5VT28 67 aa13.8□□□□□ -0.2
SHANK1-204ENST00000391814 AMBPP02760 352 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 CXCL10P02778 98 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 SELENOTP62341 195 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 SIPA1L3O60292 1781 aaPredicted RBP13.79□□□□□ -0.2
SHANK1-204ENST00000391814 SRFP11831 508 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 PEAR1Q5VY43 1037 aaPredicted RBP13.79□□□□□ -0.2
SHANK1-204ENST00000391814 RAB1CQ92928 201 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 DNAL4O96015 105 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 C9orf50Q5SZB4 431 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 GATAD1Q8WUU5 269 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 SCN8AQ9UQD0 1980 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 MOSP00540 346 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 C1QTNF9P0C862 333 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 TIMM23BQ5SRD1 257 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 OR51G1Q8NGK1 321 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 RPP25Q9BUL9 199 aaKnown RBP13.79□□□□□ -0.2
SHANK1-204ENST00000391814 METTL26Q96S19 204 aa13.79□□□□□ -0.2
SHANK1-204ENST00000391814 SMCHD1A6NHR9 2005 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 ADRA2AP08913 450 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 C4orf51C9J302 202 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 GPX4P36969 197 aaPredicted RBP13.78□□□□□ -0.2
SHANK1-204ENST00000391814 LEPP41159 167 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 RPP21Q9H633 154 aaKnown RBP13.78□□□□□ -0.2
SHANK1-204ENST00000391814 WFDC1Q9HC57 220 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 F8VVB4 439 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 F8VWA3 439 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 C19orf48Q6RUI8 117 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 PCSK4Q6UW60 755 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 DRAM1Q8N682 238 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 TRAV9-1A0A075B6T8 112 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 FOXS1O43638 330 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 RSPO4Q2I0M5 234 aaPredicted RBP13.78□□□□□ -0.2
SHANK1-204ENST00000391814 ORAOV1Q8WV07 137 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 C18orf12Q96KH6 178 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 SCN3AQ9NY46 2000 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 TRAV17A0A0B4J275 112 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 PSMB11A5LHX3 300 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 SLC25A53Q5H9E4 307 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 LINC01590Q5TEZ4 76 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 FAM74A4Q5TZK3 123 aa13.78□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A10PA6NDY2 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A18PA6NE21 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A16PA6NEW6 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A20PA6NIJ5 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A8PA6NJQ4 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A7PA6NKC0 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A22PA8MWA6 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A12PA8MX19 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A5PA8MXJ8 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A23PA8MXZ1 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 NPIPB6E9PJ23 425 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 TNFSF13O75888 250 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A15PP0C7V4 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A13PP0C7W8 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A14PP0C7W9 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FAM90A24PP0C7X0 464 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 LY6G6FQ5SQ64 297 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 PGPEP1Q9NXJ5 209 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FOXD3Q9UJU5 478 aaPredicted RBP13.77□□□□□ -0.2
SHANK1-204ENST00000391814 SS18L1O75177 396 aaPredicted RBP13.77□□□□□ -0.2
SHANK1-204ENST00000391814 CD3EP07766 207 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 HSPE1P61604 102 aaKnown RBP13.77□□□□□ -0.2
SHANK1-204ENST00000391814 GCSAMQ8N6F7 178 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 SCN9AQ15858 1988 aa13.77□□□□□ -0.2
SHANK1-204ENST00000391814 FGF16O43320 207 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 CEACAM1P13688 526 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 A0A1B0GTI1 187 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 ZNF815PA8K554 130 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 SRSF4Q08170 494 aaKnown RBP13.77□□□□□ -0.21
SHANK1-204ENST00000391814 ZNF56Q15929 161 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 SAMD5Q5TGI4 173 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 CALYQ9NYX4 217 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 IGKV1D-42A0A075B6H8 117 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 IGFBP2P18065 325 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 TRA2AQ13595 282 aaKnown RBP eCLIP13.77□□□□□ -0.21
SHANK1-204ENST00000391814 OR10J3Q5JRS4 329 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 NAA38Q9BRA0 125 aaKnown RBP13.77□□□□□ -0.21
SHANK1-204ENST00000391814 SELENOKQ9Y6D0 94 aa13.77□□□□□ -0.21
SHANK1-204ENST00000391814 ZNF146Q15072 292 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 TPTE2P1Q5T6R2 138 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 NR2C2APQ86WQ0 139 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 SCGB3A1Q96QR1 104 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 TCF19Q9Y242 345 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 PEX7O00628 323 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 C1QL2Q7Z5L3 287 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 IDI2-AS1Q9NZ38 188 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 RGPD3A6NKT7 1758 aaPredicted RBP13.76□□□□□ -0.21
SHANK1-204ENST00000391814 RGPD4Q7Z3J3 1758 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 MIR17HGQ75NE6 70 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 C19orf24Q9BVV8 132 aa13.76□□□□□ -0.21
SHANK1-204ENST00000391814 FOXI3A8MTJ6 420 aaPredicted RBP13.76□□□□□ -0.21
SHANK1-204ENST00000391814 THY1P04216 161 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms