RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 AP2S1P53680 142 aaPredicted RBP14.96□□□□□ -0.01
CLN3-206ENST00000360019 TNFRSF9Q07011 255 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 RUSC1-AS1Q66K80 236 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 PUSL1Q8N0Z8 303 aaKnown RBP14.96□□□□□ -0.01
CLN3-206ENST00000360019 MALSU1Q96EH3 234 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 BET1LQ9NYM9 111 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 FLNAP21333 2647 aaKnown RBP14.96□□□□□ -0.01
CLN3-206ENST00000360019 NOTCH2Q04721 2471 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 TEX15Q9BXT5 2789 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 IGHV1-69DA0A0B4J2H0 117 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 CHST1O43916 411 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 IGHV1-69P01742 117 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 IGHV4-38-2P0DP08 117 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 ACOT7LQ6ZUV0 252 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 OR4A16Q8NH70 328 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 AIFM2Q9BRQ8 373 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 TNCP24821 2201 aa14.96□□□□□ -0.02
CLN3-206ENST00000360019 ABCA1O95477 2261 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 C15orf61A6NNL5 157 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 WRBO00258 174 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 SYNGR2O43760 224 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 VENTXO95231 258 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 CD1BP29016 333 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 ZNF345Q14585 488 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 CCDC144NLQ6NUI1 221 aa14.95□□□□□ -0.02
CLN3-206ENST00000360019 CIARTQ8N365 385 aaPredicted RBP14.95□□□□□ -0.02
CLN3-206ENST00000360019 INO80EQ8NBZ0 244 aaPredicted RBP14.95□□□□□ -0.02
CLN3-206ENST00000360019 UPK2O00526 184 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 HKR1P10072 659 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 CNTFRP26992 372 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 PAX9P55771 341 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 UBE2KP61086 200 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 FBLN7Q53RD9 439 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 BRD3OSQ6XYD6 125 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 ZNF429Q86V71 674 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 AQP10Q96PS8 301 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 CSPG4Q6UVK1 2322 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 KBTBD11O94819 623 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 OR2F2O95006 317 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 CD24P25063 80 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 LGALS7P47929 136 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 OR2F1Q13607 317 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 KLF17Q5JT82 389 aaPredicted RBP14.94□□□□□ -0.02
CLN3-206ENST00000360019 GPR157Q5UAW9 335 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 TMUB2Q71RG4 321 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 KCNRGQ8N5I3 272 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 ARL6Q9H0F7 186 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 RBKSQ9H477 322 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 TMEM14BQ9NUH8 114 aa14.94□□□□□ -0.02
CLN3-206ENST00000360019 J3QLI3 93 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 SLC25A17O43808 307 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 SNAPC5O75971 98 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 IGKV1D-33P01593 117 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 IGKV1-33P01594 117 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 IAPPP10997 89 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 MYOD1P15172 320 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 PVALBP20472 110 aaPredicted RBP14.93□□□□□ -0.02
CLN3-206ENST00000360019 S100A11P31949 105 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 P2RY1P47900 373 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 SPINK9Q5DT21 86 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 ZDHHC16Q969W1 377 aa14.93□□□□□ -0.02
CLN3-206ENST00000360019 FOXA2Q9Y261 457 aaPredicted RBP14.93□□□□□ -0.02
CLN3-206ENST00000360019 TET2Q6N021 2002 aaPredicted RBP14.93□□□□□ -0.02
CLN3-206ENST00000360019 RPL12P30050 165 aaKnown RBP14.92□□□□□ -0.02
CLN3-206ENST00000360019 TMEM167AQ8TBQ9 72 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 RAB40CQ96S21 281 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 TPSG1Q9NRR2 321 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 LYRM2Q9NU23 88 aaPredicted RBP14.92□□□□□ -0.02
CLN3-206ENST00000360019 A0A0D9SG52 128 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 IFNA17P01571 189 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 SNRNP70P08621 437 aaKnown RBP14.92□□□□□ -0.02
CLN3-206ENST00000360019 VAMP2P63027 116 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 OPCMLQ14982 345 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 VMA21Q3ZAQ7 101 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 PDLIM3Q53GG5 364 aaPredicted RBP14.92□□□□□ -0.02
CLN3-206ENST00000360019 OR2C3Q8N628 320 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 OR52E5Q8NH55 327 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 VSTM2AQ8TAG5 236 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 RNF5Q99942 180 aa14.92□□□□□ -0.02
CLN3-206ENST00000360019 FAM24AA6NFZ4 105 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 H3BP45 60 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 CRYGBP07316 175 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 NUP62P37198 522 aaPredicted RBP14.91□□□□□ -0.02
CLN3-206ENST00000360019 CAV2P51636 162 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 PSG5Q15238 335 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 MRGPRG-AS1Q2M3A8 158 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 OR4A5Q8NH83 315 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 EAF1Q96JC9 268 aaPredicted RBP14.91□□□□□ -0.02
CLN3-206ENST00000360019 PRNDQ9UKY0 176 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 WSB1Q9Y6I7 421 aa14.91□□□□□ -0.02
CLN3-206ENST00000360019 MYO9AB2RTY4 2548 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 A0A0U1RQK1 487 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 TSC22D2O75157 780 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 MED6O75586 246 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 MOSP00540 346 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 SPCS3P61009 180 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 IFITM2Q01629 132 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 HNF4GQ14541 408 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 CLEC9AQ6UXN8 241 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 DTD1Q8TEA8 209 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms