RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TMEM147Q9BVK8 224 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 ZNF66Q6ZN08 573 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 C1orf229Q6ZS94 237 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-201ENST00000253024 FUT9Q9Y231 359 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 NPIPB11E5RHQ5 1161 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 NPPCP23582 126 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 MIC13Q5XKP0 118 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 CXXC4Q9H2H0 198 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 SIRT7Q9NRC8 400 aa17.73■□□□□ 0.43
TRIM28-201ENST00000253024 TRAV1-1A0A0B4J248 108 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 C11orf94C9JXX5 98 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 DPPA3Q6W0C5 159 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 ZCCHC24Q8N2G6 241 aaKnown RBP17.72■□□□□ 0.43
TRIM28-201ENST00000253024 PACRGQ96M98 296 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-201ENST00000253024 CLCF1Q9UBD9 225 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 ZGRF1Q86YA3 2104 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 NDUFB4O95168 129 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 ASPHD1Q5U4P2 390 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 Q8TCH9 128 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 MEGF10Q96KG7 1140 aa17.72■□□□□ 0.43
TRIM28-201ENST00000253024 IGHV1-18A0A0C4DH31 117 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 ZNF705GA8MUZ8 300 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-201ENST00000253024 SEC14L6B5MCN3 397 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 ZNF114Q8NC26 417 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 PINX1Q96BK5 328 aaKnown RBP17.71■□□□□ 0.43
TRIM28-201ENST00000253024 DCAF16Q9NXF7 216 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 NAT8Q9UHE5 227 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 SH3BGRL2Q9UJC5 107 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 PHOX2AO14813 284 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 ACTL6BO94805 426 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 GYPAP02724 150 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 THBS3P49746 956 aa17.71■□□□□ 0.43
TRIM28-201ENST00000253024 PMS2P5A8MQ11 134 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 AQP7O14520 342 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 SPINT2O43291 252 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 C1QTNF9P0C862 333 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 COX5AP20674 150 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 CDC34P49427 236 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-201ENST00000253024 SMIM21Q3B7S5 101 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 ZNF718Q3SXZ3 478 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 LRBAP50851 2863 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 TET2Q6N021 2002 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-201ENST00000253024 IGKV1D-17A0A075B6S4 117 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 IGHV2OR16-5A0A0B4J2B6 119 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 C15orf62A8K5M9 175 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 ZNF883P0CG24 379 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 FAM78BQ5VT40 261 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 INO80CQ6PI98 192 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-201ENST00000253024 OR10A7Q8NGE5 316 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 OR4A16Q8NH70 328 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 OR2V2Q96R30 315 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 ACTR3CQ9C0K3 210 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-201ENST00000253024 GFOD1Q9NXC2 390 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 CTXND1A0A1B0GTU2 59 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 MAS1LP35410 378 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 OR5B12Q96R08 314 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 AGMATQ9BSE5 352 aa17.7■□□□□ 0.42
TRIM28-201ENST00000253024 A0A1W2PPV4 95 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 SLC35E4Q6ICL7 350 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 HIST1H2BLQ99880 126 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 DSCAMO60469 2012 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 KBTBD11O94819 623 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 CLDN14O95500 239 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 MOB3BQ86TA1 216 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 TAAR6Q96RI8 345 aa17.69■□□□□ 0.42
TRIM28-201ENST00000253024 XKRY2A2RUG3 117 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 PPP5D1E7EU14 171 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 HOXB1P14653 301 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-201ENST00000253024 CD1BP29016 333 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 SPATA31B1PQ5VZV4 182 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 TCF23Q7RTU1 214 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 OR6C3Q9NZP0 311 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 CD33P20138 364 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 PLA2G2CQ5R387 149 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 HES4Q9HCC6 221 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 ABCA4P78363 2273 aa17.68■□□□□ 0.42
TRIM28-201ENST00000253024 IGKV3-15P01624 115 aa17.67■□□□□ 0.42
TRIM28-201ENST00000253024 PNRC1Q12796 327 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-201ENST00000253024 SPINK4O60575 86 aa17.67■□□□□ 0.42
TRIM28-201ENST00000253024 GATA2P23769 480 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-201ENST00000253024 MED13LQ71F56 2210 aa17.67■□□□□ 0.42
TRIM28-201ENST00000253024 DUTP33316 252 aaKnown RBP17.67■□□□□ 0.42
TRIM28-201ENST00000253024 GNB2P62879 340 aa17.67■□□□□ 0.42
TRIM28-201ENST00000253024 C22orf34Q6ZV56 151 aa17.67■□□□□ 0.42
TRIM28-201ENST00000253024 MS4A5Q9H3V2 200 aa17.67■□□□□ 0.42
TRIM28-201ENST00000253024 IGHV3-48P01763 117 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 ARL14EPLP0DKL9 152 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 CD82P27701 267 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 PDLIM3Q53GG5 364 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-201ENST00000253024 CYP2G1PQ6ZSU1 146 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 RND1Q92730 232 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 TMEM210A6NLX4 147 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 LYG1Q8N1E2 194 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 GCSAMQ8N6F7 178 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 ITLN1Q8WWA0 313 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 PRDM13Q9H4Q3 707 aa17.66■□□□□ 0.42
TRIM28-201ENST00000253024 ZNF292O60281 2723 aa17.65■□□□□ 0.42
TRIM28-201ENST00000253024 B4DEV8 164 aa17.65■□□□□ 0.42
TRIM28-201ENST00000253024 GNB1P62873 340 aa17.65■□□□□ 0.42
TRIM28-201ENST00000253024 NAV3Q8IVL0 2385 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 388.4 ms