RNA–Protein interactions for RNA: YDL231C

BRE4, Transcript of Zinc finger protein containing five transmembrane domains, yeast

Gene BRE4, Length 3,378 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE4	YDL231C	EEB1	Q02891	456 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	MZM1	Q03429	123 aa	Predicted RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	ATG16	Q03818	150 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	PIG1	Q06216	648 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	PIB1	Q06651	286 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	STB3	Q12427	513 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	YMR085W	P0CF18	432 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	PMS1	P14242	873 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	CDC3	P32457	520 aa	Known RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	FRE1	P32791	686 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	DUR3	P33413	735 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	ASK1	P35734	292 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	NOP4	P37838	685 aa	Known RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	YBR062C	P38239	180 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	SHE3	P38272	425 aa	Known RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	SMF2	P38778	549 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	RRD1	P40454	393 aa	Known RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	ASG1	P40467	964 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	YGR283C	P53336	341 aa	Predicted RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	YMR160W	Q03823	816 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	DOT1	Q04089	582 aa	Known RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	POB3	Q04636	552 aa	Known RBP	4.36	□□□□□ -1.71
BRE4	YDL231C	TAF10	Q12030	206 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	AI5_BETA	Q9ZZX0	354 aa		4.36	□□□□□ -1.71
BRE4	YDL231C	PRC1	P00729	532 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	CHS1	P08004	1131 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	CDC42	P19073	191 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	RSA4	P25382	515 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	SPT5	P27692	1063 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	SEC21	P32074	935 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	MRPL7	P36519	292 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	LIN1	P38852	340 aa	Predicted RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	ARB1	P40024	610 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	YJL107C	P42947	387 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	MND1	P53102	219 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	SYH1	Q02875	849 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	MAG2	Q06436	670 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
BRE4	YDL231C	AIM39	Q08223	395 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	YOR022C	Q12204	715 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	SUT2	Q12286	268 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	ARG1	P22768	420 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	CAD1	P24813	409 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	PLC1	P32383	869 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	PXL1	P36166	706 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	SRP68	P38687	599 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	PPX1	P38698	397 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	CCC2	P38995	1004 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	SAH1	P39954	449 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	SMX2	P40204	77 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	TFG1	P41895	735 aa	Predicted RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	NUP42	P49686	430 aa	Known RBP	4.35	□□□□□ -1.71
BRE4	YDL231C	VPS62	P53285	467 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	BIO4	P53630	237 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	HST2	P53686	357 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	HOT1	Q03213	719 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	GCN5	Q03330	439 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	YMR027W	Q04371	470 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	YLR053C	Q12026	108 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	YDR018C	Q12185	396 aa		4.35	□□□□□ -1.71
BRE4	YDL231C	HIP1	P06775	603 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	SEC14	P24280	304 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	YCL068C	P25593	260 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	UIP5	P36137	443 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	OTU2	P38747	307 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	UTP9	P38882	575 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	CDC1	P40986	491 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	ASN2	P49090	572 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	YNL144C	P53907	740 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	ULP1	Q02724	621 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	YMR187C	Q03236	431 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	ARA2	Q04212	335 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	TDA9	Q04545	1251 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	FAR8	Q05040	523 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	CRN1	Q06440	651 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
BRE4	YDL231C	CHS5	Q12114	671 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	SGT2	Q12118	346 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	CTF3	Q12748	733 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	EFG1	Q3E705	233 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	RNA1	P11745	407 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	APE1	P14904	514 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	SRV2	P17555	526 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	STE11	P23561	717 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	GCD11	P32481	527 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	GCS1	P35197	352 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	EAP1	P36041	632 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	KTR4	P38131	464 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	DUG2	P38149	878 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	SDS3	P40505	327 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	REF2	P42073	533 aa	Predicted RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	SNZ3	P43545	298 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	SNZ2	P53824	298 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	CDC55	Q00362	526 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	MRS2	Q01926	470 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	CSN9	Q03981	162 aa		4.34	□□□□□ -1.71
BRE4	YDL231C	TIF35	Q04067	274 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	YLR257W	Q06146	321 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	NOP6	Q07623	225 aa	Known RBP	4.34	□□□□□ -1.71
BRE4	YDL231C	AAD4	Q07747	329 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms