RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 ANTXR2P58335 489 aa21.36■■□□□ 1.01
SMPD3-211ENST00000568373 CELF1Q92879 486 aaKnown RBP21.36■■□□□ 1.01
SMPD3-211ENST00000568373 NLRP3Q96P20 1036 aa21.36■■□□□ 1.01
SMPD3-211ENST00000568373 C4BP0C0L5 1744 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 MBD4O95243 580 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 TRDNQ13061 729 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 TPTE2Q6XPS3 522 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 NCOA5Q9HCD5 579 aaKnown RBP21.35■■□□□ 1.01
SMPD3-211ENST00000568373 GPHNQ9NQX3 736 aaPredicted RBP21.35■■□□□ 1.01
SMPD3-211ENST00000568373 KIF3AQ9Y496 699 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 SALL1Q9NSC2 1324 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 PATL2C9JE40 543 aaKnown RBP21.35■■□□□ 1.01
SMPD3-211ENST00000568373 H3BQV1 296 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 IFFO2Q5TF58 517 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 TBC1D10CQ8IV04 446 aa21.35■■□□□ 1.01
SMPD3-211ENST00000568373 GNL3LQ9NVN8 582 aaKnown RBP21.35■■□□□ 1.01
SMPD3-211ENST00000568373 C4AP0C0L4 1744 aa21.34■■□□□ 1.01
SMPD3-211ENST00000568373 FAM173BQ6P4H8 233 aa21.34■■□□□ 1.01
SMPD3-211ENST00000568373 RBSNQ9H1K0 784 aa21.34■■□□□ 1.01
SMPD3-211ENST00000568373 ELP1O95163 1332 aa21.34■■□□□ 1.01
SMPD3-211ENST00000568373 GYG1P46976 350 aa21.33■■□□□ 1.01
SMPD3-211ENST00000568373 LRP2BPQ9P2M1 347 aa21.33■■□□□ 1.01
SMPD3-211ENST00000568373 RPS8P62241 208 aaKnown RBP21.33■■□□□ 1
SMPD3-211ENST00000568373 RESTQ13127 1097 aa21.33■■□□□ 1
SMPD3-211ENST00000568373 CCDC183Q5T5S1 534 aa21.33■■□□□ 1
SMPD3-211ENST00000568373 NAA16Q6N069 864 aaPredicted RBP21.33■■□□□ 1
SMPD3-211ENST00000568373 ARMT1Q9H993 441 aa21.33■■□□□ 1
SMPD3-211ENST00000568373 EPB41L4AQ9HCS5 686 aaPredicted RBP21.33■■□□□ 1
SMPD3-211ENST00000568373 RBM6P78332 1123 aaKnown RBP21.32■■□□□ 1
SMPD3-211ENST00000568373 CAVIN4Q5BKX8 364 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 TTC6Q86TZ1 520 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 IFNL3Q8IZI9 196 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 SCAND2PQ9GZW5 306 aaPredicted RBP21.32■■□□□ 1
SMPD3-211ENST00000568373 ZSCAN16Q9H4T2 348 aaPredicted RBP21.32■■□□□ 1
SMPD3-211ENST00000568373 IQSEC3Q9UPP2 1182 aaPredicted RBP21.32■■□□□ 1
SMPD3-211ENST00000568373 PNPLA7Q6ZV29 1317 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 KLF18A0A0U1RQI7 1052 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 WTIPA6NIX2 430 aaPredicted RBP21.32■■□□□ 1
SMPD3-211ENST00000568373 GNAT2P19087 354 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 RFC4P35249 363 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 BCL11BQ9C0K0 894 aaPredicted RBP21.32■■□□□ 1
SMPD3-211ENST00000568373 NAPBQ9H115 298 aa21.32■■□□□ 1
SMPD3-211ENST00000568373 TRAPPC3LQ5T215 181 aa21.31■■□□□ 1
SMPD3-211ENST00000568373 COL1A1P02452 1464 aaPredicted RBP21.3■■□□□ 1
SMPD3-211ENST00000568373 GOLGA8BA8MQT2 603 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 GSG1L2A8MUP6 293 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 DENND2AQ9ULE3 1009 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 HPS5Q9UPZ3 1129 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 DHX16O60231 1041 aaKnown RBP21.3■■□□□ 1
SMPD3-211ENST00000568373 RXRBP28702 533 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 FAM196AQ6ZSG2 479 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 VPS37DQ86XT2 251 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 LCORLQ8N3X6 602 aa21.3■■□□□ 1
SMPD3-211ENST00000568373 ANP32BQ92688 251 aaKnown RBP21.3■■□□□ 1
SMPD3-211ENST00000568373 FAM84BQ96KN1 310 aaPredicted RBP21.3■■□□□ 1
SMPD3-211ENST00000568373 CHD4Q14839 1912 aa21.29■■□□□ 1
SMPD3-211ENST00000568373 CARMIL3Q8ND23 1372 aa21.29■■□□□ 1
SMPD3-211ENST00000568373 TPRNQ4KMQ1 711 aa21.29■■□□□ 1
SMPD3-211ENST00000568373 CYB5R4Q7L1T6 521 aa21.29■■□□□ 1
SMPD3-211ENST00000568373 CCDC24Q8N4L8 307 aa21.29■■□□□ 1
SMPD3-211ENST00000568373 ANGEL1Q9UNK9 670 aaKnown RBP21.29■■□□□ 1
SMPD3-211ENST00000568373 LETM1O95202 739 aaPredicted RBP21.28■■□□□ 1
SMPD3-211ENST00000568373 NACAP1Q9BZK3 213 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 ANKRD2Q9GZV1 360 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 TSPY26PQ9H489 355 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 ABCF2Q9UG63 623 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 TIAM2Q8IVF5 1701 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 NEDD4P46934 1319 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 B4E1Z4 1266 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 CCDC173Q0VFZ6 552 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 NKX2-3Q8TAU0 364 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 SPATA32Q96LK8 384 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 LRRC4BQ9NT99 713 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 TFIP11Q9UBB9 837 aaKnown RBP21.28■■□□□ 1
SMPD3-211ENST00000568373 SLC4A4Q9Y6R1 1079 aa21.28■■□□□ 1
SMPD3-211ENST00000568373 SH2B2O14492 632 aaPredicted RBP21.27■■□□□ 1
SMPD3-211ENST00000568373 PRKAB2O43741 272 aa21.27■■□□□ 1
SMPD3-211ENST00000568373 FDPSP14324 419 aaKnown RBP21.27■■□□□ 1
SMPD3-211ENST00000568373 CYP7A1P22680 504 aa21.27■■□□□ 1
SMPD3-211ENST00000568373 TM4SF1P30408 202 aa21.27■■□□□ 1
SMPD3-211ENST00000568373 FBXO33Q7Z6M2 555 aa21.27■■□□□ 1
SMPD3-211ENST00000568373 MIGA1Q8NAN2 632 aa21.27■■□□□ 1
SMPD3-211ENST00000568373 LEO1Q8WVC0 666 aaPredicted RBP21.27■■□□□ 1
SMPD3-211ENST00000568373 TNRC6CQ9HCJ0 1690 aaKnown RBP21.27■■□□□ 1
SMPD3-211ENST00000568373 SEMA3EO15041 775 aa21.27■□□□□ 0.99
SMPD3-211ENST00000568373 ADRA2BP18089 450 aa21.27■□□□□ 0.99
SMPD3-211ENST00000568373 TMEM87BQ96K49 555 aa21.27■□□□□ 0.99
SMPD3-211ENST00000568373 PPP1R9BQ96SB3 815 aa21.27■□□□□ 0.99
SMPD3-211ENST00000568373 RAI14Q9P0K7 980 aa21.27■□□□□ 0.99
SMPD3-211ENST00000568373 MYH15Q9Y2K3 1946 aa21.26■□□□□ 0.99
SMPD3-211ENST00000568373 NPHP1O15259 732 aa21.26■□□□□ 0.99
SMPD3-211ENST00000568373 TDO2P48775 406 aa21.26■□□□□ 0.99
SMPD3-211ENST00000568373 CACNA1SQ13698 1873 aa21.26■□□□□ 0.99
SMPD3-211ENST00000568373 PPFIA3O75145 1194 aa21.25■□□□□ 0.99
SMPD3-211ENST00000568373 FOSBP53539 338 aa21.25■□□□□ 0.99
SMPD3-211ENST00000568373 NFIXQ14938 502 aa21.25■□□□□ 0.99
SMPD3-211ENST00000568373 ADGRA1Q86SQ6 560 aa21.25■□□□□ 0.99
SMPD3-211ENST00000568373 KLHL34Q8N239 644 aa21.25■□□□□ 0.99
SMPD3-211ENST00000568373 FAM43AQ8N2R8 423 aa21.25■□□□□ 0.99
SMPD3-211ENST00000568373 CNNM2Q9H8M5 875 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms