RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 SLFN5Q08AF3 891 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 MAP3K11Q16584 847 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 CDCA7LQ96GN5 454 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 USP44Q9H0E7 712 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 TTF2Q9UNY4 1162 aaKnown RBP14.65□□□□□ -0.06
USP3-214ENST00000559718 PPP2R3BQ9Y5P8 575 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 PTPRCP08575 1304 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 MROH5Q6ZUA9 1318 aa14.65□□□□□ -0.06
USP3-214ENST00000559718 SOX10P56693 466 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 SREBF2Q12772 1141 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 RASA3Q14644 834 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 METTL24Q5JXM2 366 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 FBXO33Q7Z6M2 555 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 VGLL2Q8N8G2 317 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 SLC10A4Q96EP9 437 aa14.64□□□□□ -0.07
USP3-214ENST00000559718 TDRD3Q9H7E2 651 aaKnown RBP14.64□□□□□ -0.07
USP3-214ENST00000559718 ZNF70Q9UC06 446 aaPredicted RBP14.64□□□□□ -0.07
USP3-214ENST00000559718 GPR25O00155 361 aa14.63□□□□□ -0.07
USP3-214ENST00000559718 PPP1R12BO60237 982 aaPredicted RBP14.63□□□□□ -0.07
USP3-214ENST00000559718 CHAF1AQ13111 956 aaPredicted RBP14.63□□□□□ -0.07
USP3-214ENST00000559718 SUPT20HL1Q3ZLR7 823 aa14.63□□□□□ -0.07
USP3-214ENST00000559718 CDAN1Q8IWY9 1227 aa14.63□□□□□ -0.07
USP3-214ENST00000559718 SERPINA10Q9UK55 444 aa14.63□□□□□ -0.07
USP3-214ENST00000559718 USP2O75604 605 aaPredicted RBP14.62□□□□□ -0.07
USP3-214ENST00000559718 PDE8BO95263 885 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 GJA5P36382 358 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 CRKP46108 304 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 BCAMP50895 628 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 VPS37DQ86XT2 251 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 DZIP1LQ8IYY4 767 aaKnown RBP14.62□□□□□ -0.07
USP3-214ENST00000559718 WNK4Q96J92 1243 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 HPS5Q9UPZ3 1129 aa14.62□□□□□ -0.07
USP3-214ENST00000559718 TCP10L2B9ZVM9 353 aa14.61□□□□□ -0.07
USP3-214ENST00000559718 IFNL1Q8IU54 200 aa14.61□□□□□ -0.07
USP3-214ENST00000559718 TEPSINQ96N21 525 aa14.61□□□□□ -0.07
USP3-214ENST00000559718 ARAP2Q8WZ64 1704 aa14.61□□□□□ -0.07
USP3-214ENST00000559718 MANSC4A6NHS7 340 aaPredicted RBP14.6□□□□□ -0.07
USP3-214ENST00000559718 IGF2BP3O00425 579 aaKnown RBP eCLIP14.6□□□□□ -0.07
USP3-214ENST00000559718 ZBTB48P10074 688 aaPredicted RBP14.6□□□□□ -0.07
USP3-214ENST00000559718 IREB2P48200 963 aaKnown RBP14.6□□□□□ -0.07
USP3-214ENST00000559718 RFX5P48382 616 aaPredicted RBP14.6□□□□□ -0.07
USP3-214ENST00000559718 TNFAIP1Q13829 316 aa14.6□□□□□ -0.07
USP3-214ENST00000559718 CAVIN4Q5BKX8 364 aa14.6□□□□□ -0.07
USP3-214ENST00000559718 NOM1Q5C9Z4 860 aaKnown RBP14.6□□□□□ -0.07
USP3-214ENST00000559718 CFHR5Q9BXR6 569 aa14.6□□□□□ -0.07
USP3-214ENST00000559718 TMEM39BQ9GZU3 492 aa14.6□□□□□ -0.07
USP3-214ENST00000559718 SMC4Q9NTJ3 1288 aa14.6□□□□□ -0.07
USP3-214ENST00000559718 FKTNO75072 461 aa14.59□□□□□ -0.07
USP3-214ENST00000559718 FRAT2O75474 233 aaPredicted RBP14.59□□□□□ -0.07
USP3-214ENST00000559718 FGFR2P21802 821 aa14.59□□□□□ -0.07
USP3-214ENST00000559718 CACNB3P54284 484 aa14.59□□□□□ -0.07
USP3-214ENST00000559718 ALDH1L2Q3SY69 923 aa14.59□□□□□ -0.07
USP3-214ENST00000559718 TRMT2AQ8IZ69 625 aaKnown RBP14.59□□□□□ -0.07
USP3-214ENST00000559718 OTOFQ9HC10 1997 aa14.58□□□□□ -0.07
USP3-214ENST00000559718 PUM3Q15397 648 aaKnown RBP14.58□□□□□ -0.08
USP3-214ENST00000559718 PKN2Q16513 984 aaKnown RBP14.58□□□□□ -0.08
USP3-214ENST00000559718 ANKRD13AQ8IZ07 590 aa14.58□□□□□ -0.08
USP3-214ENST00000559718 ELP3Q9H9T3 547 aa14.58□□□□□ -0.08
USP3-214ENST00000559718 UNCXA6NJT0 531 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 EYA2O00167 538 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 ALDH1A1P00352 501 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 INHBEP58166 350 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.57□□□□□ -0.08
USP3-214ENST00000559718 ATG9AQ7Z3C6 839 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 TBC1D22AQ8WUA7 517 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 OPTNQ96CV9 577 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 PTPN18Q99952 460 aa14.57□□□□□ -0.08
USP3-214ENST00000559718 NOB1Q9ULX3 412 aaKnown RBP14.57□□□□□ -0.08
USP3-214ENST00000559718 LAMB1P07942 1786 aa14.56□□□□□ -0.08
USP3-214ENST00000559718 IFIT1P09914 478 aaKnown RBP14.56□□□□□ -0.08
USP3-214ENST00000559718 HDLBPQ00341 1268 aaKnown RBP14.56□□□□□ -0.08
USP3-214ENST00000559718 APOBEC3HQ6NTF7 200 aaKnown RBP14.56□□□□□ -0.08
USP3-214ENST00000559718 FBXO46Q6PJ61 603 aaPredicted RBP14.56□□□□□ -0.08
USP3-214ENST00000559718 TEKT1Q969V4 418 aa14.56□□□□□ -0.08
USP3-214ENST00000559718 SIL1Q9H173 461 aa14.56□□□□□ -0.08
USP3-214ENST00000559718 UBTFL1P0CB47 393 aaPredicted RBP14.55□□□□□ -0.08
USP3-214ENST00000559718 TNNI2P48788 182 aa14.55□□□□□ -0.08
USP3-214ENST00000559718 CRHR2Q13324 411 aa14.55□□□□□ -0.08
USP3-214ENST00000559718 VGLL4Q14135 290 aa14.55□□□□□ -0.08
USP3-214ENST00000559718 ZDHHC15Q96MV8 337 aa14.55□□□□□ -0.08
USP3-214ENST00000559718 KIF16BQ96L93 1317 aa14.55□□□□□ -0.08
USP3-214ENST00000559718 TESPA1A2RU30 521 aaPredicted RBP14.54□□□□□ -0.08
USP3-214ENST00000559718 SLC5A1P13866 664 aa14.54□□□□□ -0.08
USP3-214ENST00000559718 MAP3K9P80192 1104 aa14.54□□□□□ -0.08
USP3-214ENST00000559718 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.54□□□□□ -0.08
USP3-214ENST00000559718 LPIN2Q92539 896 aa14.54□□□□□ -0.08
USP3-214ENST00000559718 MS4A4AQ96JQ5 239 aa14.54□□□□□ -0.08
USP3-214ENST00000559718 CAP1Q01518 475 aa14.53□□□□□ -0.08
USP3-214ENST00000559718 OTOP1Q7RTM1 612 aa14.53□□□□□ -0.08
USP3-214ENST00000559718 BRI3BPQ8WY22 251 aa14.53□□□□□ -0.08
USP3-214ENST00000559718 MRIQ9BWK5 157 aa14.53□□□□□ -0.08
USP3-214ENST00000559718 PA2G4Q9UQ80 394 aaKnown RBP14.53□□□□□ -0.08
USP3-214ENST00000559718 SUGT1Q9Y2Z0 365 aa14.53□□□□□ -0.08
USP3-214ENST00000559718 TRIM17Q9Y577 477 aa14.53□□□□□ -0.08
USP3-214ENST00000559718 LRRFIP2Q9Y608 721 aaKnown RBP14.53□□□□□ -0.08
USP3-214ENST00000559718 TNRC18O15417 2968 aaPredicted RBP14.52□□□□□ -0.08
USP3-214ENST00000559718 PDE4DIPQ5VU43 2346 aa14.52□□□□□ -0.08
USP3-214ENST00000559718 ATP2B3Q16720 1220 aa14.52□□□□□ -0.09
USP3-214ENST00000559718 OTUD7BQ6GQQ9 843 aa14.52□□□□□ -0.09
USP3-214ENST00000559718 HHIPL2Q6UWX4 724 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms