RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TDRD7Q8NHU6 1098 aaKnown RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 FAM84BQ96KN1 310 aaPredicted RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 ANGEL1Q9UNK9 670 aaKnown RBP10.69□□□□□ -0.7
USP28-215ENST00000545608 RIPOR2Q9Y4F9 1068 aa10.69□□□□□ -0.7
USP28-215ENST00000545608 CACNA1FO60840 1977 aa10.68□□□□□ -0.7
USP28-215ENST00000545608 FAM205AQ6ZU69 1335 aa10.68□□□□□ -0.7
USP28-215ENST00000545608 HIBADHP31937 336 aaKnown RBP10.68□□□□□ -0.7
USP28-215ENST00000545608 GYG1P46976 350 aa10.68□□□□□ -0.7
USP28-215ENST00000545608 UBE4AQ14139 1066 aa10.68□□□□□ -0.7
USP28-215ENST00000545608 MFRPQ9BY79 579 aa10.68□□□□□ -0.7
USP28-215ENST00000545608 BICC1Q9H694 974 aaKnown RBP10.68□□□□□ -0.7
USP28-215ENST00000545608 RBM5P52756 815 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP28-215ENST00000545608 MAP3K11Q16584 847 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 RABL6Q3YEC7 729 aaPredicted RBP10.67□□□□□ -0.7
USP28-215ENST00000545608 LRRC24Q50LG9 513 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 NBPF12Q5TAG4 269 aaPredicted RBP10.67□□□□□ -0.7
USP28-215ENST00000545608 SPRYD7Q5W111 196 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 CTU1Q7Z7A3 348 aaKnown RBP10.67□□□□□ -0.7
USP28-215ENST00000545608 ANKRD44Q8N8A2 993 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 ZNF296Q8WUU4 475 aaPredicted RBP10.67□□□□□ -0.7
USP28-215ENST00000545608 SSH1Q8WYL5 1049 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 R3HDMLQ9H3Y0 253 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 VEZTQ9HBM0 779 aa10.67□□□□□ -0.7
USP28-215ENST00000545608 GPR25O00155 361 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 MYO1BO43795 1136 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 SLFN5Q08AF3 891 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 RASA3Q14644 834 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 GRIK5Q16478 980 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 MFSD14BQ5SR56 506 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 FBXO33Q7Z6M2 555 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 IFNL1Q8IU54 200 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 SLC10A4Q96EP9 437 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 CLMNQ96JQ2 1002 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 TTF2Q9UNY4 1162 aaKnown RBP10.66□□□□□ -0.7
USP28-215ENST00000545608 PPP2R3BQ9Y5P8 575 aa10.66□□□□□ -0.7
USP28-215ENST00000545608 SSC5DA1L4H1 1573 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 PTPRCP08575 1304 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 MROH5Q6ZUA9 1318 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 E9PSI1 815 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 PPP1R12BO60237 982 aaPredicted RBP10.65□□□□□ -0.7
USP28-215ENST00000545608 USP2O75604 605 aaPredicted RBP10.65□□□□□ -0.7
USP28-215ENST00000545608 SREBF2Q12772 1141 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 SUPT20HL1Q3ZLR7 823 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 KLHDC4Q8TBB5 520 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 CDCA7LQ96GN5 454 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 USP44Q9H0E7 712 aa10.65□□□□□ -0.7
USP28-215ENST00000545608 TDRD3Q9H7E2 651 aaKnown RBP10.65□□□□□ -0.7
USP28-215ENST00000545608 ZNF70Q9UC06 446 aaPredicted RBP10.65□□□□□ -0.7
USP28-215ENST00000545608 IQSEC3Q9UPP2 1182 aaPredicted RBP10.65□□□□□ -0.7
USP28-215ENST00000545608 COL1A1P02452 1464 aaPredicted RBP10.64□□□□□ -0.71
USP28-215ENST00000545608 MAP3K13O43283 966 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 SOX10P56693 466 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 METTL24Q5JXM2 366 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 DZIP1LQ8IYY4 767 aaKnown RBP10.64□□□□□ -0.71
USP28-215ENST00000545608 VGLL2Q8N8G2 317 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 KIF12Q96FN5 646 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 WNK4Q96J92 1243 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 SERPINA10Q9UK55 444 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 AKAP11Q9UKA4 1901 aa10.64□□□□□ -0.71
USP28-215ENST00000545608 A0A1B0GUL6 1792 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 MANSC4A6NHS7 340 aaPredicted RBP10.63□□□□□ -0.71
USP28-215ENST00000545608 PDE8BO95263 885 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 GJA5P36382 358 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 CRKP46108 304 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 BCAMP50895 628 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 CHAF1AQ13111 956 aaPredicted RBP10.63□□□□□ -0.71
USP28-215ENST00000545608 NOM1Q5C9Z4 860 aaKnown RBP10.63□□□□□ -0.71
USP28-215ENST00000545608 CHRDL2Q6WN34 429 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 VPS37DQ86XT2 251 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 CDAN1Q8IWY9 1227 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 CFHR5Q9BXR6 569 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 HPS5Q9UPZ3 1129 aa10.63□□□□□ -0.71
USP28-215ENST00000545608 UNCXA6NJT0 531 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 TCP10L2B9ZVM9 353 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 IGF2BP3O00425 579 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP28-215ENST00000545608 FKTNO75072 461 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 ZBTB48P10074 688 aaPredicted RBP10.62□□□□□ -0.71
USP28-215ENST00000545608 FGFR2P21802 821 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 IREB2P48200 963 aaKnown RBP10.62□□□□□ -0.71
USP28-215ENST00000545608 RFX5P48382 616 aaPredicted RBP10.62□□□□□ -0.71
USP28-215ENST00000545608 INHBEP58166 350 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 PKN2Q16513 984 aaKnown RBP10.62□□□□□ -0.71
USP28-215ENST00000545608 CAVIN4Q5BKX8 364 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 TRMT2AQ8IZ69 625 aaKnown RBP10.62□□□□□ -0.71
USP28-215ENST00000545608 EFCAB3Q8N7B9 438 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 TEPSINQ96N21 525 aa10.62□□□□□ -0.71
USP28-215ENST00000545608 FRAT2O75474 233 aaPredicted RBP10.61□□□□□ -0.71
USP28-215ENST00000545608 ALDH1A1P00352 501 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 TNFAIP1Q13829 316 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 ALDH1L2Q3SY69 923 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 ANKRD13AQ8IZ07 590 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 PIP4P2Q8N4L2 257 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 KCNV2Q8TDN2 545 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 TMEM39BQ9GZU3 492 aa10.61□□□□□ -0.71
USP28-215ENST00000545608 EYA2O00167 538 aa10.6□□□□□ -0.71
USP28-215ENST00000545608 IFIT1P09914 478 aaKnown RBP10.6□□□□□ -0.71
USP28-215ENST00000545608 CACNB3P54284 484 aa10.6□□□□□ -0.71
USP28-215ENST00000545608 HDLBPQ00341 1268 aaKnown RBP10.6□□□□□ -0.71
USP28-215ENST00000545608 PUM3Q15397 648 aaKnown RBP10.6□□□□□ -0.71
USP28-215ENST00000545608 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms