RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 LDLRAD1Q5T700 205 aa11.62□□□□□ -0.55
HDAC3-215ENST00000519474 TBC1D22AQ8WUA7 517 aa11.62□□□□□ -0.55
HDAC3-215ENST00000519474 ZBTB22O15209 634 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 MYO1BO43795 1136 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 SLC10A3P09131 477 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 ADORA1P30542 326 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 PHKA1P46020 1223 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 PRKG1Q13976 671 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 RASA3Q14644 834 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 NBPF12Q5TAG4 269 aaPredicted RBP11.61□□□□□ -0.55
HDAC3-215ENST00000519474 TNS4Q8IZW8 715 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 BEGAINQ9BUH8 593 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 TSKSQ9UJT2 592 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 FZD1Q9UP38 647 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 SUGT1Q9Y2Z0 365 aa11.61□□□□□ -0.55
HDAC3-215ENST00000519474 USP2O75604 605 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-215ENST00000519474 NF2P35240 595 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 TTLL12Q14166 644 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-215ENST00000519474 POLA2Q14181 598 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 SPDYE2Q495Y8 402 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 CCDC102BQ68D86 513 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 APOBEC3HQ6NTF7 200 aaKnown RBP11.6□□□□□ -0.55
HDAC3-215ENST00000519474 RASAL3Q86YV0 1011 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 WDR66Q8TBY9 1149 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 VEZTQ9HBM0 779 aa11.6□□□□□ -0.55
HDAC3-215ENST00000519474 G3BP1Q13283 466 aaKnown RBP eCLIP11.59□□□□□ -0.55
HDAC3-215ENST00000519474 MAP3K11Q16584 847 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 SUPT20HL1Q3ZLR7 823 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 HHIPL2Q6UWX4 724 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 ARMC9Q7Z3E5 817 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 SSH3Q8TE77 659 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 UBE2Q2Q8WVN8 375 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 XAGE2Q96GT9 111 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 ZDHHC15Q96MV8 337 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 TEPSINQ96N21 525 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 GNL3LQ9NVN8 582 aaKnown RBP11.59□□□□□ -0.55
HDAC3-215ENST00000519474 ANGEL1Q9UNK9 670 aaKnown RBP11.59□□□□□ -0.55
HDAC3-215ENST00000519474 AKAP2Q9Y2D5 859 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 PPP2R3BQ9Y5P8 575 aa11.59□□□□□ -0.55
HDAC3-215ENST00000519474 A0A1B0GUL7 405 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 TCP10L2B9ZVM9 353 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 PANK1Q8TE04 598 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 TEKT1Q969V4 418 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 SLC10A4Q96EP9 437 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 NEUROD6Q96NK8 337 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 RNF186Q9NXI6 227 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 DENND2AQ9ULE3 1009 aa11.58□□□□□ -0.56
HDAC3-215ENST00000519474 CA12O43570 354 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 PPP1R12BO60237 982 aaPredicted RBP11.57□□□□□ -0.56
HDAC3-215ENST00000519474 TRPA1O75762 1119 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 PRDX5P30044 214 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 TM4SF4P48230 202 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 ITPRIPQ8IWB1 547 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 CDAN1Q8IWY9 1227 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 FTSJ3Q8IY81 847 aaKnown RBP11.57□□□□□ -0.56
HDAC3-215ENST00000519474 C1orf115Q9H7X2 142 aa11.57□□□□□ -0.56
HDAC3-215ENST00000519474 NOP58Q9Y2X3 529 aaKnown RBP11.57□□□□□ -0.56
HDAC3-215ENST00000519474 SEMA3EO15041 775 aa11.56□□□□□ -0.56
HDAC3-215ENST00000519474 CENPBP07199 599 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-215ENST00000519474 CACNB3P54284 484 aa11.56□□□□□ -0.56
HDAC3-215ENST00000519474 REM2Q8IYK8 340 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-215ENST00000519474 CLMNQ96JQ2 1002 aa11.56□□□□□ -0.56
HDAC3-215ENST00000519474 TMEM39BQ9GZU3 492 aa11.56□□□□□ -0.56
HDAC3-215ENST00000519474 SALL1Q9NSC2 1324 aa11.56□□□□□ -0.56
HDAC3-215ENST00000519474 PCNTO95613 3336 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 UNCXA6NJT0 531 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 SURF6O75683 361 aaKnown RBP11.55□□□□□ -0.56
HDAC3-215ENST00000519474 LDHBP07195 334 aaKnown RBP11.55□□□□□ -0.56
HDAC3-215ENST00000519474 MKRN3Q13064 507 aaKnown RBP11.55□□□□□ -0.56
HDAC3-215ENST00000519474 TNFAIP1Q13829 316 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 RASGRF1Q13972 1273 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 DIXDC1Q155Q3 683 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 FKBP1CQ5VVH2 108 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 SPRYD7Q5W111 196 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 CDC42EP5Q6NZY7 148 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 GPR108Q9NPR9 543 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 RCAN3Q9UKA8 241 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 DAGLAQ9Y4D2 1042 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 THSD7BQ9C0I4 1608 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 MAST3O60307 1309 aa11.55□□□□□ -0.56
HDAC3-215ENST00000519474 PAPPA2Q9BXP8 1791 aa11.54□□□□□ -0.56
HDAC3-215ENST00000519474 TNNI2P48788 182 aa11.54□□□□□ -0.56
HDAC3-215ENST00000519474 MVPQ14764 893 aaKnown RBP11.54□□□□□ -0.56
HDAC3-215ENST00000519474 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-215ENST00000519474 FAM83AQ86UY5 434 aa11.54□□□□□ -0.56
HDAC3-215ENST00000519474 FAM163AQ96GL9 167 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-215ENST00000519474 HMG20BQ9P0W2 317 aa11.54□□□□□ -0.56
HDAC3-215ENST00000519474 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-215ENST00000519474 COL1A1P02452 1464 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-215ENST00000519474 SSC5DA1L4H1 1573 aa11.54□□□□□ -0.56
HDAC3-215ENST00000519474 MS4A1P11836 297 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 GJA5P36382 358 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 IREB2P48200 963 aaKnown RBP11.53□□□□□ -0.56
HDAC3-215ENST00000519474 MAP3K9P80192 1104 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 CEP85Q6P2H3 762 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 TBC1D9Q6ZT07 1266 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 ZFPM1Q8IX07 1006 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 ZGPATQ8N5A5 531 aaKnown RBP11.53□□□□□ -0.56
HDAC3-215ENST00000519474 ZNF384Q8TF68 577 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 USP40Q9NVE5 1235 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms