RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MKRN3Q13064 507 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 RASA3Q14644 834 aa22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 INTS3Q68E01 1043 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 ATG9AQ7Z3C6 839 aa22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 DZIP1LQ8IYY4 767 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 ZNF70Q9UC06 446 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 FZD1Q9UP38 647 aa22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 GTF3C3Q9Y5Q9 886 aa22.36■■□□□ 1.17
SQSTM1-209ENST00000504627 AOX1Q06278 1338 aa22.35■■□□□ 1.17
SQSTM1-209ENST00000504627 CIAO1O76071 339 aa22.35■■□□□ 1.17
SQSTM1-209ENST00000504627 ERICH6BQ5W0A0 696 aa22.35■■□□□ 1.17
SQSTM1-209ENST00000504627 ZKSCAN2Q63HK3 967 aa22.35■■□□□ 1.17
SQSTM1-209ENST00000504627 CASP8AP2Q9UKL3 1982 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 PDE3AQ14432 1141 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 GRIK5Q16478 980 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 ATP2B3Q16720 1220 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 SPDYE2Q495Y8 402 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 LDLRAD1Q5T700 205 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 NBPF12Q5TAG4 269 aaPredicted RBP22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 TEKT1Q969V4 418 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 SLC10A4Q96EP9 437 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 ECM29Q5VYK3 1845 aa22.34■■□□□ 1.17
SQSTM1-209ENST00000504627 MS4A1P11836 297 aa22.33■■□□□ 1.17
SQSTM1-209ENST00000504627 IL15P40933 162 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-209ENST00000504627 TNNI2P48788 182 aa22.33■■□□□ 1.17
SQSTM1-209ENST00000504627 HDLBPQ00341 1268 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-209ENST00000504627 PA2G4Q9UQ80 394 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-209ENST00000504627 AKAP11Q9UKA4 1901 aa22.33■■□□□ 1.16
SQSTM1-209ENST00000504627 TCP10L2B9ZVM9 353 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 TRIM27P14373 513 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 IREB2P48200 963 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 SREBF2Q12772 1141 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 DGKZQ13574 1117 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 MAP3K11Q16584 847 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 ATF7IPQ6VMQ6 1270 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 MCOLN1Q9GZU1 580 aa22.32■■□□□ 1.16
SQSTM1-209ENST00000504627 MAST3O60307 1309 aa22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 WDR66Q8TBY9 1149 aa22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 CLUAP1Q96AJ1 413 aa22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 COPRSQ9NQ92 184 aa22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 GNL3LQ9NVN8 582 aaKnown RBP22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 SUGT1Q9Y2Z0 365 aa22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 ARAP2Q8WZ64 1704 aa22.31■■□□□ 1.16
SQSTM1-209ENST00000504627 SRGAP3O43295 1099 aa22.3■■□□□ 1.16
SQSTM1-209ENST00000504627 TM4SF4P48230 202 aa22.3■■□□□ 1.16
SQSTM1-209ENST00000504627 IRX6P78412 446 aaPredicted RBP22.3■■□□□ 1.16
SQSTM1-209ENST00000504627 SPRYD7Q5W111 196 aa22.3■■□□□ 1.16
SQSTM1-209ENST00000504627 TMOD2Q9NZR1 351 aa22.3■■□□□ 1.16
SQSTM1-209ENST00000504627 CCDC85CA6NKD9 419 aa22.29■■□□□ 1.16
SQSTM1-209ENST00000504627 MRIQ9BWK5 157 aa22.29■■□□□ 1.16
SQSTM1-209ENST00000504627 SSC5DA1L4H1 1573 aa22.29■■□□□ 1.16
SQSTM1-209ENST00000504627 UNCXA6NJT0 531 aa22.28■■□□□ 1.16
SQSTM1-209ENST00000504627 USP2O75604 605 aaPredicted RBP22.28■■□□□ 1.16
SQSTM1-209ENST00000504627 TBC1D8O95759 1140 aa22.28■■□□□ 1.16
SQSTM1-209ENST00000504627 CLMNQ96JQ2 1002 aa22.28■■□□□ 1.16
SQSTM1-209ENST00000504627 TMEM39BQ9GZU3 492 aa22.28■■□□□ 1.16
SQSTM1-209ENST00000504627 TNNQ9UQP3 1299 aa22.28■■□□□ 1.16
SQSTM1-209ENST00000504627 GNAI2P04899 355 aa22.27■■□□□ 1.16
SQSTM1-209ENST00000504627 FTSJ3Q8IY81 847 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-209ENST00000504627 ANKRD13AQ8IZ07 590 aa22.27■■□□□ 1.16
SQSTM1-209ENST00000504627 ZDHHC15Q96MV8 337 aa22.27■■□□□ 1.16
SQSTM1-209ENST00000504627 ZBTB48P10074 688 aaPredicted RBP22.26■■□□□ 1.15
SQSTM1-209ENST00000504627 CACNB3P54284 484 aa22.26■■□□□ 1.15
SQSTM1-209ENST00000504627 C20orf194Q5TEA3 1177 aa22.26■■□□□ 1.15
SQSTM1-209ENST00000504627 HHIPL2Q6UWX4 724 aa22.26■■□□□ 1.15
SQSTM1-209ENST00000504627 MANSC4A6NHS7 340 aaPredicted RBP22.25■■□□□ 1.15
SQSTM1-209ENST00000504627 INHBEP58166 350 aa22.25■■□□□ 1.15
SQSTM1-209ENST00000504627 MTX1Q13505 466 aa22.25■■□□□ 1.15
SQSTM1-209ENST00000504627 WNK4Q96J92 1243 aa22.25■■□□□ 1.15
SQSTM1-209ENST00000504627 TEPSINQ96N21 525 aa22.25■■□□□ 1.15
SQSTM1-209ENST00000504627 DENND2AQ9ULE3 1009 aa22.25■■□□□ 1.15
SQSTM1-209ENST00000504627 SEMA3EO15041 775 aa22.24■■□□□ 1.15
SQSTM1-209ENST00000504627 PHKA1P46020 1223 aa22.24■■□□□ 1.15
SQSTM1-209ENST00000504627 TIMM10P62072 90 aa22.24■■□□□ 1.15
SQSTM1-209ENST00000504627 APOBEC3HQ6NTF7 200 aaKnown RBP22.24■■□□□ 1.15
SQSTM1-209ENST00000504627 CDAN1Q8IWY9 1227 aa22.24■■□□□ 1.15
SQSTM1-209ENST00000504627 AKAP2Q9Y2D5 859 aa22.24■■□□□ 1.15
SQSTM1-209ENST00000504627 ALDH1A1P00352 501 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 LDHBP07195 334 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 ADORA1P30542 326 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 TFCP2Q12800 502 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 CCDC102BQ68D86 513 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 TMEM57Q8N5G2 664 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 PANK1Q8TE04 598 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 CRBNQ96SW2 442 aa22.23■■□□□ 1.15
SQSTM1-209ENST00000504627 PRDX5P30044 214 aa22.22■■□□□ 1.15
SQSTM1-209ENST00000504627 CTU1Q7Z7A3 348 aaKnown RBP22.22■■□□□ 1.15
SQSTM1-209ENST00000504627 FAM83AQ86UY5 434 aa22.22■■□□□ 1.15
SQSTM1-209ENST00000504627 ELP3Q9H9T3 547 aa22.22■■□□□ 1.15
SQSTM1-209ENST00000504627 MYH13Q9UKX3 1938 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 A0A1B0GUL7 405 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 RLBP1P12271 317 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 G3BP1Q13283 466 aaKnown RBP eCLIP22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 DIXDC1Q155Q3 683 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 FKBP1CQ5VVH2 108 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 ZNF296Q8WUU4 475 aaPredicted RBP22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 HOOK2Q96ED9 719 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 NEUROD6Q96NK8 337 aa22.21■■□□□ 1.15
SQSTM1-209ENST00000504627 GPR25O00155 361 aa22.2■■□□□ 1.14
SQSTM1-209ENST00000504627 MAP3K9P80192 1104 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms