RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 TCP10L2B9ZVM9 353 aa30.68■■■□□ 2.5
LIME1-206ENST00000487026 TBC1D22AQ8WUA7 517 aa30.68■■■□□ 2.5
LIME1-206ENST00000487026 SREBF2Q12772 1141 aa30.67■■■□□ 2.5
LIME1-206ENST00000487026 CDAN1Q8IWY9 1227 aa30.67■■■□□ 2.5
LIME1-206ENST00000487026 TNFAIP1Q13829 316 aa30.66■■■□□ 2.5
LIME1-206ENST00000487026 ARAP2Q8WZ64 1704 aa30.66■■■□□ 2.5
LIME1-206ENST00000487026 SLC5A1P13866 664 aa30.65■■■□□ 2.5
LIME1-206ENST00000487026 IREB2P48200 963 aaKnown RBP30.65■■■□□ 2.5
LIME1-206ENST00000487026 LPIN2Q92539 896 aa30.65■■■□□ 2.5
LIME1-206ENST00000487026 MEIS3Q99687 375 aa30.65■■■□□ 2.5
LIME1-206ENST00000487026 CACNB3P54284 484 aa30.64■■■□□ 2.5
LIME1-206ENST00000487026 ZNF296Q8WUU4 475 aaPredicted RBP30.64■■■□□ 2.5
LIME1-206ENST00000487026 WNK4Q96J92 1243 aa30.64■■■□□ 2.5
LIME1-206ENST00000487026 TEPSINQ96N21 525 aa30.64■■■□□ 2.5
LIME1-206ENST00000487026 TMEM39BQ9GZU3 492 aa30.64■■■□□ 2.5
LIME1-206ENST00000487026 R3HDMLQ9H3Y0 253 aa30.64■■■□□ 2.5
LIME1-206ENST00000487026 PA2G4Q9UQ80 394 aaKnown RBP30.64■■■□□ 2.5
LIME1-206ENST00000487026 KIF16BQ96L93 1317 aa30.64■■■□□ 2.5
LIME1-206ENST00000487026 HDLBPQ00341 1268 aaKnown RBP30.63■■■□□ 2.49
LIME1-206ENST00000487026 CTU1Q7Z7A3 348 aaKnown RBP30.63■■■□□ 2.49
LIME1-206ENST00000487026 TEKT1Q969V4 418 aa30.63■■■□□ 2.49
LIME1-206ENST00000487026 CEP126Q9P2H0 1117 aa30.62■■■□□ 2.49
LIME1-206ENST00000487026 GPR25O00155 361 aa30.61■■■□□ 2.49
LIME1-206ENST00000487026 MANSC4A6NHS7 340 aaPredicted RBP30.6■■■□□ 2.49
LIME1-206ENST00000487026 CIAO1O76071 339 aa30.6■■■□□ 2.49
LIME1-206ENST00000487026 ZBTB48P10074 688 aaPredicted RBP30.6■■■□□ 2.49
LIME1-206ENST00000487026 GJA5P36382 358 aa30.6■■■□□ 2.49
LIME1-206ENST00000487026 TNNI2P48788 182 aa30.6■■■□□ 2.49
LIME1-206ENST00000487026 ATP2B3Q16720 1220 aa30.6■■■□□ 2.49
LIME1-206ENST00000487026 ANKRD13AQ8IZ07 590 aa30.6■■■□□ 2.49
LIME1-206ENST00000487026 ARHGAP45Q92619 1136 aa30.6■■■□□ 2.49
LIME1-206ENST00000487026 UNCXA6NJT0 531 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 INTS3Q68E01 1043 aaKnown RBP30.59■■■□□ 2.49
LIME1-206ENST00000487026 ZDHHC15Q96MV8 337 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 MRIQ9BWK5 157 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 ELP3Q9H9T3 547 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 FBXO3Q9UK99 471 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 HDAC5Q9UQL6 1122 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 TNNQ9UQP3 1299 aa30.59■■■□□ 2.49
LIME1-206ENST00000487026 APOBEC3HQ6NTF7 200 aaKnown RBP30.58■■■□□ 2.49
LIME1-206ENST00000487026 IFNL1Q8IU54 200 aa30.58■■■□□ 2.49
LIME1-206ENST00000487026 BCAR3O75815 825 aa30.57■■■□□ 2.48
LIME1-206ENST00000487026 IL15P40933 162 aaPredicted RBP30.57■■■□□ 2.48
LIME1-206ENST00000487026 RGS19P49795 217 aa30.57■■■□□ 2.48
LIME1-206ENST00000487026 INHBEP58166 350 aa30.57■■■□□ 2.48
LIME1-206ENST00000487026 WDR66Q8TBY9 1149 aa30.57■■■□□ 2.48
LIME1-206ENST00000487026 SUGT1Q9Y2Z0 365 aa30.57■■■□□ 2.48
LIME1-206ENST00000487026 IGF2BP3O00425 579 aaKnown RBP eCLIP30.56■■■□□ 2.48
LIME1-206ENST00000487026 FRAT1Q92837 279 aaPredicted RBP30.56■■■□□ 2.48
LIME1-206ENST00000487026 COPRSQ9NQ92 184 aa30.56■■■□□ 2.48
LIME1-206ENST00000487026 MLLT1Q03111 559 aaPredicted RBP30.55■■■□□ 2.48
LIME1-206ENST00000487026 HHIPL2Q6UWX4 724 aa30.55■■■□□ 2.48
LIME1-206ENST00000487026 CFHR5Q9BXR6 569 aa30.55■■■□□ 2.48
LIME1-206ENST00000487026 MAST3O60307 1309 aa30.54■■■□□ 2.48
LIME1-206ENST00000487026 ALDH1A1P00352 501 aa30.54■■■□□ 2.48
LIME1-206ENST00000487026 PPP1R3FQ6ZSY5 799 aaPredicted RBP30.54■■■□□ 2.48
LIME1-206ENST00000487026 MIER1Q8N108 512 aa30.54■■■□□ 2.48
LIME1-206ENST00000487026 OPTNQ96CV9 577 aa30.54■■■□□ 2.48
LIME1-206ENST00000487026 FKTNO75072 461 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 GNAI3P08754 354 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 TRIM27P14373 513 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 ADORA1P30542 326 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 PHKA1P46020 1223 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 NOM1Q5C9Z4 860 aaKnown RBP30.53■■■□□ 2.48
LIME1-206ENST00000487026 CNKSR2Q8WXI2 1034 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 GNL3LQ9NVN8 582 aaKnown RBP30.53■■■□□ 2.48
LIME1-206ENST00000487026 TMOD2Q9NZR1 351 aa30.53■■■□□ 2.48
LIME1-206ENST00000487026 IPO8O15397 1037 aaKnown RBP30.52■■■□□ 2.48
LIME1-206ENST00000487026 MAP3K9P80192 1104 aa30.52■■■□□ 2.48
LIME1-206ENST00000487026 DIXDC1Q155Q3 683 aa30.52■■■□□ 2.48
LIME1-206ENST00000487026 CLUAP1Q96AJ1 413 aa30.52■■■□□ 2.48
LIME1-206ENST00000487026 SRGAP3O43295 1099 aa30.51■■■□□ 2.47
LIME1-206ENST00000487026 PRDX5P30044 214 aa30.51■■■□□ 2.47
LIME1-206ENST00000487026 TIMM10P62072 90 aa30.51■■■□□ 2.47
LIME1-206ENST00000487026 OTOFQ9HC10 1997 aa30.51■■■□□ 2.47
LIME1-206ENST00000487026 MYH13Q9UKX3 1938 aa30.5■■■□□ 2.47
LIME1-206ENST00000487026 SOX10P56693 466 aa30.5■■■□□ 2.47
LIME1-206ENST00000487026 VGLL4Q14135 290 aa30.5■■■□□ 2.47
LIME1-206ENST00000487026 PTPN18Q99952 460 aa30.5■■■□□ 2.47
LIME1-206ENST00000487026 HPS5Q9UPZ3 1129 aa30.5■■■□□ 2.47
LIME1-206ENST00000487026 FKBP1CQ5VVH2 108 aa30.49■■■□□ 2.47
LIME1-206ENST00000487026 ATF7IPQ6VMQ6 1270 aa30.49■■■□□ 2.47
LIME1-206ENST00000487026 FAM83AQ86UY5 434 aa30.49■■■□□ 2.47
LIME1-206ENST00000487026 DDX55Q8NHQ9 600 aaKnown RBP eCLIP30.49■■■□□ 2.471e-7■□□□□ 9
LIME1-206ENST00000487026 DAGLAQ9Y4D2 1042 aa30.49■■■□□ 2.47
LIME1-206ENST00000487026 LDHBP07195 334 aaKnown RBP30.48■■■□□ 2.47
LIME1-206ENST00000487026 TFCP2Q12800 502 aa30.48■■■□□ 2.47
LIME1-206ENST00000487026 PKN2Q16513 984 aaKnown RBP30.48■■■□□ 2.47
LIME1-206ENST00000487026 CCDC102BQ68D86 513 aa30.48■■■□□ 2.47
LIME1-206ENST00000487026 DENND2AQ9ULE3 1009 aa30.48■■■□□ 2.47
LIME1-206ENST00000487026 HNRNPUQ00839 825 aaKnown RBP eCLIP30.47■■■□□ 2.47
LIME1-206ENST00000487026 CSADQ9Y600 493 aa30.47■■■□□ 2.47
LIME1-206ENST00000487026 TESPA1A2RU30 521 aaPredicted RBP30.46■■■□□ 2.47
LIME1-206ENST00000487026 MTX1Q13505 466 aa30.46■■■□□ 2.47
LIME1-206ENST00000487026 OTUD7BQ6GQQ9 843 aa30.46■■■□□ 2.47
LIME1-206ENST00000487026 CDC42EP5Q6NZY7 148 aa30.46■■■□□ 2.47
LIME1-206ENST00000487026 MS4A4AQ96JQ5 239 aa30.46■■■□□ 2.47
LIME1-206ENST00000487026 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP30.46■■■□□ 2.47
LIME1-206ENST00000487026 CRHR2Q13324 411 aa30.45■■■□□ 2.47
LIME1-206ENST00000487026 MIGA2Q7L4E1 593 aa30.45■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms