RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 RNF135Q8IUD6 432 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 FHDC1Q9C0D6 1143 aaPredicted RBP6.38□□□□□ -1.39
PTCD3-213ENST00000480102 ZMYND15Q9H091 742 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 OSBPL3Q9H4L5 887 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 ZBTB1Q9Y2K1 713 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 RNF123Q5XPI4 1314 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 COL15A1P39059 1388 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 C10orf71Q711Q0 1435 aa6.38□□□□□ -1.39
PTCD3-213ENST00000480102 GOLGB1Q14789 3259 aaKnown RBP6.37□□□□□ -1.39
PTCD3-213ENST00000480102 SCN11AQ9UI33 1791 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 RIC1Q4ADV7 1423 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 FIGNL2A6NMB9 653 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 VEGFBP49765 207 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 KCNQ4P56696 695 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 GNAI1P63096 354 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 LRP10Q7Z4F1 713 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 WDR63Q8IWG1 891 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 DOLKQ9UPQ8 538 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 ZNF652Q9Y2D9 606 aa6.37□□□□□ -1.39
PTCD3-213ENST00000480102 UBR2Q8IWV8 1755 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 ATP10DQ9P241 1426 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 POLRMTO00411 1230 aaKnown RBP6.36□□□□□ -1.39
PTCD3-213ENST00000480102 CAMTA2O94983 1202 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 MYCP01106 439 aaPredicted RBP6.36□□□□□ -1.39
PTCD3-213ENST00000480102 MMP10P09238 476 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 PTSQ03393 145 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 TSGA10IPQ3SY00 556 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 NPM2Q86SE8 214 aaKnown RBP6.36□□□□□ -1.39
PTCD3-213ENST00000480102 IRF7Q92985 503 aa6.36□□□□□ -1.39
PTCD3-213ENST00000480102 COL5A3P25940 1745 aaPredicted RBP6.36□□□□□ -1.39
PTCD3-213ENST00000480102 CARMIL3Q8ND23 1372 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 A0A1W2PRU2 124 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 APAF1O14727 1248 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 PPFIA3O75145 1194 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 GPC1P35052 558 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 RNF144AP50876 292 aaPredicted RBP6.35□□□□□ -1.39
PTCD3-213ENST00000480102 TRIM28Q13263 835 aaKnown RBP6.35□□□□□ -1.39
PTCD3-213ENST00000480102 HOMEZQ8IX15 550 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 ZNF428Q96B54 188 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 BRIP1Q9BX63 1249 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 ALG2Q9H553 416 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 ARHGEF10LQ9HCE6 1279 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 MRS2Q9HD23 443 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 DBF4Q9UBU7 674 aaPredicted RBP6.35□□□□□ -1.39
PTCD3-213ENST00000480102 TSPYL4Q9UJ04 414 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 USP16Q9Y5T5 823 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 PARP3Q9Y6F1 533 aa6.35□□□□□ -1.39
PTCD3-213ENST00000480102 ITGB4P16144 1822 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 ZNF521Q96K83 1311 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 MEN1O00255 615 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 WIPF1O43516 503 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 KCNQ3O43525 872 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 GNRH1P01148 92 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 VSIG8P0DPA2 414 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 CLN3Q13286 438 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 DCTN1Q14203 1278 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 NFIXQ14938 502 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 HSP90AB3PQ58FF7 597 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 OXLD1Q5BKU9 147 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 NBPF10Q6P3W6 841 aaKnown RBP6.34□□□□□ -1.39
PTCD3-213ENST00000480102 LYSMD3Q7Z3D4 306 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 NBPF15Q8N660 670 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 PLPP7Q8NBV4 271 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 CLUAP1Q96AJ1 413 aa6.34□□□□□ -1.39
PTCD3-213ENST00000480102 DDX21Q9NR30 783 aaKnown RBP eCLIP6.34□□□□□ -1.39
PTCD3-213ENST00000480102 SIPA1L3O60292 1781 aaPredicted RBP6.34□□□□□ -1.4
PTCD3-213ENST00000480102 TJP1Q07157 1748 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 MAP3K15Q6ZN16 1313 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 UBR3Q6ZT12 1888 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 SLC35F4A4IF30 521 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 POM121CA8CG34 1229 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 A1BGP04217 495 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 KCNA3P22001 575 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 PDE6BP35913 854 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 DDR1Q08345 913 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 USP4Q13107 963 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 MAP7D1Q3KQU3 841 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 PARP10Q53GL7 1025 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 USPL1Q5W0Q7 1092 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 NLRP3Q96P20 1036 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 SETDB2Q96T68 719 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 RAB6BQ9NRW1 208 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 HYPKQ9NX55 129 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 TAF1LQ8IZX4 1826 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 PXDNLA1KZ92 1463 aa6.33□□□□□ -1.4
PTCD3-213ENST00000480102 PIK3CDO00329 1044 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 SERPINB2P05120 415 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 CT47B1P0C2W7 299 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-213ENST00000480102 HSP90B1P14625 803 aaKnown RBP6.32□□□□□ -1.4
PTCD3-213ENST00000480102 CNGB1Q14028 1251 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-213ENST00000480102 CRY2Q49AN0 593 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 SLC10A5Q5PT55 438 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 SOGA3Q5TF21 947 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 TPTE2Q6XPS3 522 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 ZNF34Q8IZ26 560 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 CCDC155Q8N6L0 562 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 NYXQ9GZU5 481 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 MBIPQ9NS73 344 aa6.32□□□□□ -1.4
PTCD3-213ENST00000480102 SENP3-EIF4A1A0A087X0R7 540 aa6.31□□□□□ -1.4
PTCD3-213ENST00000480102 IL2RAP01589 272 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms