RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 TRIM5Q9C035 493 aa12.15□□□□□ -0.46
CD44-210ENST00000434472 DNAJC25Q9H1X3 360 aa12.15□□□□□ -0.46
CD44-210ENST00000434472 POLR3EQ9NVU0 708 aa12.15□□□□□ -0.46
CD44-210ENST00000434472 ANGEL1Q9UNK9 670 aaKnown RBP12.15□□□□□ -0.46
CD44-210ENST00000434472 ZNF532Q9HCE3 1301 aa12.15□□□□□ -0.46
CD44-210ENST00000434472 COL22A1Q8NFW1 1626 aaPredicted RBP12.15□□□□□ -0.47
CD44-210ENST00000434472 SH2B2O14492 632 aaPredicted RBP12.15□□□□□ -0.47
CD44-210ENST00000434472 IDH1O75874 414 aaKnown RBP12.15□□□□□ -0.47
CD44-210ENST00000434472 MAP3K12Q12852 859 aa12.15□□□□□ -0.47
CD44-210ENST00000434472 PI16Q6UXB8 463 aa12.15□□□□□ -0.47
CD44-210ENST00000434472 SYNE3Q6ZMZ3 975 aa12.15□□□□□ -0.47
CD44-210ENST00000434472 MTERF4Q7Z6M4 381 aaKnown RBP12.15□□□□□ -0.47
CD44-210ENST00000434472 ILDR1Q86SU0 546 aaPredicted RBP12.15□□□□□ -0.47
CD44-210ENST00000434472 DRC7Q8IY82 874 aa12.15□□□□□ -0.47
CD44-210ENST00000434472 NAT10Q9H0A0 1025 aaKnown RBP12.15□□□□□ -0.47
CD44-210ENST00000434472 GOLPH3LQ9H4A5 285 aa12.15□□□□□ -0.47
CD44-210ENST00000434472 ARAP2Q8WZ64 1704 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 NUP98P52948 1817 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 AKAP11Q9UKA4 1901 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 TCRBV5S4A2TA0A5A2 114 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 PATL2C9JE40 543 aaKnown RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 APPP05067 770 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 GNAT2P19087 354 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 PHKA1P46020 1223 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 EIF5P55010 431 aaKnown RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 SNW1Q13573 536 aaKnown RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 MYSM1Q5VVJ2 828 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 DDX60Q8IY21 1712 aaKnown RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 SPC24Q8NBT2 197 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 LINC00301Q8NCQ3 95 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 AIDAQ96BJ3 306 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 UTP14AQ9BVJ6 771 aaKnown RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 CNNM2Q9H8M5 875 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 GPHNQ9NQX3 736 aaPredicted RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 CCDC87Q9NVE4 849 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 PCDHA7Q9UN72 937 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 THRAP3Q9Y2W1 955 aaKnown RBP12.14□□□□□ -0.47
CD44-210ENST00000434472 RTL9Q8NET4 1388 aa12.14□□□□□ -0.47
CD44-210ENST00000434472 UBN2Q6ZU65 1347 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 WNK3Q9BYP7 1800 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 SPTLC2O15270 562 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 NEMFO60524 1076 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 METAP2P50579 478 aaKnown RBP eCLIP12.13□□□□□ -0.47
CD44-210ENST00000434472 IQCB1Q15051 598 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 CEP57L1Q8IYX8 460 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
CD44-210ENST00000434472 MPNDQ8N594 471 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 SPATA5Q8NB90 893 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 MYRIPQ8NFW9 859 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 SYTL4Q96C24 671 aaPredicted RBP12.13□□□□□ -0.47
CD44-210ENST00000434472 STRBPQ96SI9 672 aaKnown RBP12.13□□□□□ -0.47
CD44-210ENST00000434472 PDCL3Q9H2J4 239 aa12.13□□□□□ -0.47
CD44-210ENST00000434472 BECN2A8MW95 431 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 KIF23Q02241 960 aaPredicted RBP12.12□□□□□ -0.47
CD44-210ENST00000434472 CHAF1AQ13111 956 aaPredicted RBP12.12□□□□□ -0.47
CD44-210ENST00000434472 ZRSR1Q15695 479 aaKnown RBP12.12□□□□□ -0.47
CD44-210ENST00000434472 CCDC152Q4G0S7 254 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 TBC1D10CQ8IV04 446 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 WASF1Q92558 559 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 MRFAP1L1Q96HT8 127 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 MPHOSPH8Q99549 860 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 KRT23Q9C075 422 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 KCNF1Q9H3M0 494 aa12.12□□□□□ -0.47
CD44-210ENST00000434472 AHDC1Q5TGY3 1603 aaPredicted RBP12.12□□□□□ -0.47
CD44-210ENST00000434472 KDM4FA0A1W2PPD8 638 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 PTGS1P23219 599 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 IGHMBP2P38935 993 aaKnown RBP12.11□□□□□ -0.47
CD44-210ENST00000434472 LIFRP42702 1097 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 TRIM29Q14134 588 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 ANO1Q5XXA6 986 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 CYB5R4Q7L1T6 521 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 SGMS1Q86VZ5 419 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 JMYQ8N9B5 988 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 SDF4Q9BRK5 362 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 ALG1Q9BT22 464 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 MTA3Q9BTC8 594 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 NACAP1Q9BZK3 213 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 FTOQ9C0B1 505 aaKnown RBP eCLIP12.11□□□□□ -0.47
CD44-210ENST00000434472 NBPF3Q9H094 633 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 NAPBQ9H115 298 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 STK36Q9NRP7 1315 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 C4AP0C0L4 1744 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 C4BP0C0L5 1744 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 ZBTB43O43298 467 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 CMA1P23946 247 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 TPM4P67936 248 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 DHX8Q14562 1220 aaKnown RBP12.11□□□□□ -0.47
CD44-210ENST00000434472 GLIPR1L2Q4G1C9 344 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 SUSD4Q5VX71 490 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 APOA5Q6Q788 366 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 NFXL1Q6ZNB6 911 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 C11orf57Q6ZUT1 292 aaPredicted RBP12.11□□□□□ -0.47
CD44-210ENST00000434472 CCDC186Q7Z3E2 898 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 IFNL3Q8IZI9 196 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 BPIFA3Q9BQP9 254 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 CLIP2Q9UDT6 1046 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 WWC3Q9ULE0 1092 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 PYCARDQ9ULZ3 195 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 CLIC4Q9Y696 253 aa12.11□□□□□ -0.47
CD44-210ENST00000434472 COL16A1Q07092 1604 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms