RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 LIN7CQ9NUP9 197 aaKnown RBP15.52■□□□□ 0.08
CCDC3-201ENST00000378825 TRBV6-6A0A0A6YYG2 114 aa15.52■□□□□ 0.07
CCDC3-201ENST00000378825 ODAMA1E959 279 aa15.52■□□□□ 0.07
CCDC3-201ENST00000378825 PMS2P5A8MQ11 134 aa15.52■□□□□ 0.07
CCDC3-201ENST00000378825 GFRA1P56159 465 aa15.52■□□□□ 0.07
CCDC3-201ENST00000378825 TIPARPQ7Z3E1 657 aaKnown RBP15.52■□□□□ 0.07
CCDC3-201ENST00000378825 POM121L2Q96KW2 1035 aa15.52■□□□□ 0.07
CCDC3-201ENST00000378825 FKBP11Q9NYL4 201 aa15.52■□□□□ 0.07
CCDC3-201ENST00000378825 S1PR2O95136 353 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 BRWD1-AS2P59051 145 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 GNB1P62873 340 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 NEIL1Q96FI4 390 aaPredicted RBP15.51■□□□□ 0.07
CCDC3-201ENST00000378825 SPENQ96T58 3664 aaKnown RBP15.51■□□□□ 0.07
CCDC3-201ENST00000378825 NPCDR1Q9BY65 106 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 RBFOX2O43251 390 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC3-201ENST00000378825 NDUFB4O95168 129 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 COX5BP10606 129 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 RPL29P47914 159 aaKnown RBP15.51■□□□□ 0.07
CCDC3-201ENST00000378825 DUSP3P51452 185 aaPredicted RBP15.51■□□□□ 0.07
CCDC3-201ENST00000378825 RPL15P61313 204 aaKnown RBP15.51■□□□□ 0.07
CCDC3-201ENST00000378825 LINC01551Q86U37 167 aa15.51■□□□□ 0.07
CCDC3-201ENST00000378825 CER1O95813 267 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 CYC1P08574 325 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 SDSLQ96GA7 329 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 TRAPPC1Q9Y5R8 145 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 PCSK5Q92824 1860 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 ANKRD30BLA7E2S9 258 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 C17orf98A8MV24 154 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 SS18L1O75177 396 aaPredicted RBP15.5■□□□□ 0.07
CCDC3-201ENST00000378825 GNG3P63215 75 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 TRA2AQ13595 282 aaKnown RBP eCLIP15.5■□□□□ 0.07
CCDC3-201ENST00000378825 IQCJQ1A5X6 159 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 WDYHV1Q96HA8 205 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 GUCD1Q96NT3 240 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 IMMP2LQ96T52 175 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 STRADBQ9C0K7 418 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 OR2D2Q9H210 308 aa15.5■□□□□ 0.07
CCDC3-201ENST00000378825 TRBV20OR9-2A0A075B6H5 130 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF497Q6ZNH5 498 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 CISD2Q8N5K1 135 aaKnown RBP15.49■□□□□ 0.07
CCDC3-201ENST00000378825 HSPB7Q9UBY9 170 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 MT-CO3P00414 261 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 ALKBH6Q3KRA9 238 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF573Q86YE8 665 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 OR52L2PQ8NGH6 319 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 CT55Q8WUE5 264 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 ANAPC16Q96DE5 110 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 TMEM147Q9BVK8 224 aa15.49■□□□□ 0.07
CCDC3-201ENST00000378825 TYMSP04818 313 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 FRMD6-AS1P0C7T7 363 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF25P17030 456 aaPredicted RBP15.48■□□□□ 0.07
CCDC3-201ENST00000378825 ACOT6Q3I5F7 207 aaPredicted RBP15.48■□□□□ 0.07
CCDC3-201ENST00000378825 PARD6GQ9BYG4 376 aaPredicted RBP15.48■□□□□ 0.07
CCDC3-201ENST00000378825 LOXL2Q9Y4K0 774 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 TIMM9Q9Y5J7 89 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 RBMXL2O75526 392 aaKnown RBP15.48■□□□□ 0.07
CCDC3-201ENST00000378825 THBS3P49746 956 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 ERVFC1-1P60608 527 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 RAB4BP61018 213 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 DCAF12Q5T6F0 453 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 PATZ1Q9HBE1 687 aaKnown RBP15.48■□□□□ 0.07
CCDC3-201ENST00000378825 MANBALQ9NQG1 85 aa15.48■□□□□ 0.07
CCDC3-201ENST00000378825 TECTAO75443 2155 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 LRRC30A6NM36 301 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 FAM166BA8MTA8 275 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF705FA8MVS1 300 aaPredicted RBP15.47■□□□□ 0.07
CCDC3-201ENST00000378825 CDIPTO14735 213 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 MLNRO43193 412 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF705DP0CH99 300 aaPredicted RBP15.47■□□□□ 0.07
CCDC3-201ENST00000378825 ZNF705BP0CI00 300 aaPredicted RBP15.47■□□□□ 0.07
CCDC3-201ENST00000378825 COX5AP20674 150 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 ADMP35318 185 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 EDDM3BP56851 147 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 C1orf210Q8IVY1 113 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 Q8N7P7 452 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 OR10P1Q8NGE3 313 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 DTD1Q8TEA8 209 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 NAGKQ9UJ70 344 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 BDP1A6H8Y1 2624 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 NPIPB11E5RHQ5 1161 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 PSPNO60542 156 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 TDGF1P3P51864 188 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 NUFIP2Q7Z417 695 aaKnown RBP15.47■□□□□ 0.07
CCDC3-201ENST00000378825 MCEMP1Q8IX19 187 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 SGMS2Q8NHU3 365 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 MS4A10Q96PG2 267 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 TBX15Q96SF7 602 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 C12orf49Q9H741 205 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 IL17BQ9UHF5 180 aa15.47■□□□□ 0.07
CCDC3-201ENST00000378825 BTF3P20290 206 aaKnown RBP15.46■□□□□ 0.07
CCDC3-201ENST00000378825 SRP14P37108 136 aaKnown RBP15.46■□□□□ 0.07
CCDC3-201ENST00000378825 OR3A1P47881 315 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 TPRX1Q8N7U7 411 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 PLPPR2Q96GM1 343 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 TMEM68Q96MH6 324 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 TP53TG3Q9ULZ0 132 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 MED13Q9UHV7 2174 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 WNT2P09544 360 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 CD82P27701 267 aa15.46■□□□□ 0.07
CCDC3-201ENST00000378825 CDC34P49427 236 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms