RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 HACD4Q5VWC8 232 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 SYPL2Q5VXT5 272 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 CASP12Q6UXS9 341 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 GALNT10Q86SR1 603 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 COMMD7Q86VX2 200 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 GID4Q8IVV7 300 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TMEM105Q8N8V8 129 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ST20-AS1Q8NBB2 130 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 APCDD1LQ8NCL9 501 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 GPR26Q8NDV2 337 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 OR2D3Q8NGH3 330 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PHOSPHO2Q8TCD6 241 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 NEK7Q8TDX7 302 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 DCAKDQ8WVC6 231 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 EEF1AKMT1Q8WVE0 214 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 KCTD4Q8WVF5 259 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ASB13Q8WXK3 278 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 DCUN1D1Q96GG9 259 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 BIRC8Q96P09 236 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PRRT1Q99946 306 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ANAPC13Q9BS18 74 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TMEM243Q9BU79 118 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TIPINQ9BVW5 301 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 KIFC1Q9BW19 673 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PECRQ9BY49 303 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 BCL2L14Q9BZR8 327 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 MS4A6AQ9H2W1 248 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 FBXL15Q9H469 300 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 TRABDQ9H4I3 376 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 NMNAT1Q9HAN9 279 aaPredicted RBP1.4□□□□□ -2.19
CD44-239ENST00000639002 BATF3Q9NR55 127 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 C8orf17Q9NRJ1 99 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PARVAQ9NVD7 372 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 DHCR7Q9UBM7 475 aaKnown RBP1.4□□□□□ -2.19
CD44-239ENST00000639002 VPS29Q9UBQ0 182 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 GLS2Q9UI32 602 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 VAX2Q9UIW0 290 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 FBXO5Q9UKT4 447 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 POLR1DQ9Y2S0 133 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 INSIG2Q9Y5U4 225 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ALG5Q9Y673 324 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 NCOR1O75376 2440 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 ZNF608Q9ULD9 1512 aaPredicted RBP1.4□□□□□ -2.19
CD44-239ENST00000639002 NCOA1Q15788 1441 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PCDH11XQ9BZA7 1347 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 BPTFQ12830 3046 aa1.4□□□□□ -2.19
CD44-239ENST00000639002 PBRM1Q86U86 1689 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 A0A1W2PP64 1363 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 FLT4P35916 1363 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 EIF3AQ14152 1382 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 CHD2O14647 1828 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 VIRMAQ69YN4 1812 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 IGHV3-49A0A0A0MS15 119 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 IGHV7-4-1A0A0J9YVY3 117 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 A0A1B0GV50 99 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 A0A1B0GV72 72 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 PGPA6NDG6 321 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 ARGFXA6NJG6 315 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 FAM183AA6NL82 134 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CLDN24A6NM45 220 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OR5K4A6NMS3 321 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CD300LBA8K4G0 201 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 FADS1O60427 444 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 NOS1APO75052 506 aaPredicted RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 ARL6IP5O75915 188 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CIAO1O76071 339 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CNIH1O95406 144 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TRBV12-3P01733 135 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 IL3P08700 152 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SNRPAP09012 282 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 SCGB1C2P0DMR2 95 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CD79AP11912 226 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 ELK4P28324 431 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 DDTP30046 118 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 ADORA1P30542 326 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TGFBR2P37173 567 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 LGALS7P47929 136 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 PSMD8P48556 350 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 NDUFA8P51970 172 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SPCS3P61009 180 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 BTN3A2P78410 334 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 S100A12P80511 92 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 BAMBIQ13145 260 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 KRR1Q13601 381 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 C1DQ13901 141 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 FAM53BQ14153 422 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 EDDM3AQ14507 147 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TAF1AQ15573 450 aaPredicted RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 SLC9A3R2Q15599 337 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 MOGQ16653 247 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 C4orf26Q17RF5 130 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 C6orf99Q4VX62 202 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 LIN52Q52LA3 116 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TEX30Q5JUR7 227 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 FAM162BQ5T6X4 162 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 N4BP2L1Q5TBK1 243 aaPredicted RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 C1orf195Q5TG92 126 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 KCTD16Q68DU8 428 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 XKRXQ6PP77 449 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OPN5Q6U736 354 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms