RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 KLF14Q8TD94 323 aaPredicted RBP18.24■□□□□ 0.51
TRIM54-202ENST00000380075 PARP11Q9NR21 331 aa18.24■□□□□ 0.51
TRIM54-202ENST00000380075 CCL28Q9NRJ3 127 aa18.24■□□□□ 0.51
TRIM54-202ENST00000380075 SHANK1Q9Y566 2161 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 NKX2-6A6NCS4 301 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 SLC33A1O00400 549 aaPredicted RBP18.23■□□□□ 0.51
TRIM54-202ENST00000380075 HSD17B6O14756 317 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 NXPH2O95156 264 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 OR2H2O95918 312 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 NKX2-1P43699 371 aaPredicted RBP18.23■□□□□ 0.51
TRIM54-202ENST00000380075 PXDC1Q5TGL8 231 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 VWA1Q6PCB0 445 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 DMBX1Q8NFW5 382 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 ERGIC1Q969X5 290 aa18.23■□□□□ 0.51
TRIM54-202ENST00000380075 MED6O75586 246 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 PGLYRP1O75594 196 aaPredicted RBP18.22■□□□□ 0.51
TRIM54-202ENST00000380075 SEC11BP0C7V7 166 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 MMP9P14780 707 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 TDGF1P3P51864 188 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 OR8G5Q8NG78 346 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 LRRC46Q96FV0 321 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 FAM212BQ9NTI7 297 aaPredicted RBP18.22■□□□□ 0.51
TRIM54-202ENST00000380075 COQ3Q9NZJ6 369 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 F2RP25116 425 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 BCL2L14Q9BZR8 327 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 MS4A7Q9GZW8 240 aaPredicted RBP18.22■□□□□ 0.51
TRIM54-202ENST00000380075 C11orf1Q9H5F2 150 aa18.22■□□□□ 0.51
TRIM54-202ENST00000380075 CDIPTO14735 213 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 ATG12O94817 140 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 DEFA5Q01523 94 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 P2RY6Q15077 328 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 NMSQ5H8A3 153 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 C5orf24Q7Z6I8 188 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 SPAG16Q8N0X2 631 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 BOLLQ8N9W6 283 aaKnown RBP18.21■□□□□ 0.51
TRIM54-202ENST00000380075 OR10V1Q8NGI7 309 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 LILRB1Q8NHL6 650 aaPredicted RBP18.21■□□□□ 0.51
TRIM54-202ENST00000380075 AKR1E2Q96JD6 320 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 GINS3Q9BRX5 216 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 SMIM3Q9BZL3 60 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 HES4Q9HCC6 221 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 MBNL3Q9NUK0 354 aaKnown RBP18.21■□□□□ 0.51
TRIM54-202ENST00000380075 PURGQ9UJV8 347 aaKnown RBP18.21■□□□□ 0.51
TRIM54-202ENST00000380075 WIPI2Q9Y4P8 454 aa18.21■□□□□ 0.51
TRIM54-202ENST00000380075 WDR1O75083 606 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 CAV2P51636 162 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 F2RL1P55085 397 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 TLE1Q04724 770 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 OR2C3Q8N628 320 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 FAM169BQ8N8A8 192 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 CXXC4Q9H2H0 198 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 TAAR3PQ9P1P4 343 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 TRAPPC2LQ9UL33 140 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 ZDHHC8Q9ULC8 765 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 PROCRQ9UNN8 238 aa18.21■□□□□ 0.5
TRIM54-202ENST00000380075 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.2■□□□□ 0.5
TRIM54-202ENST00000380075 SIRPB1O00241 398 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 IGLV1-44P01699 117 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 SLC25A6P12236 298 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 KITLGP21583 273 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 SWI5Q1ZZU3 235 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 ALKBH6Q3KRA9 238 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 KRTCAP3Q53RY4 240 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 C10orf91Q5T1B1 145 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 SVBPQ8N300 66 aa18.2■□□□□ 0.5
TRIM54-202ENST00000380075 ABCD4O14678 606 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 ADAM20O43506 726 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 FBXO24O75426 580 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 MPV17P39210 176 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 LPAR6P43657 344 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 RAB5CP51148 216 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 ZNF273Q14593 569 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 BTNL8Q6UX41 500 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 PLPPR1Q8TBJ4 325 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 SLC25A31Q9H0C2 315 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 HRH4Q9H3N8 390 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 ERRFI1Q9UJM3 462 aaPredicted RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 CARHSP1Q9Y2V2 147 aaKnown RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 RELNP78509 3460 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 MBD3L4A6NDZ8 208 aaPredicted RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 MBD3L3A6NE82 208 aaPredicted RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 MBD3L5A6NJ08 208 aaPredicted RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 TNFSF13O75888 250 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 HMGN3Q15651 99 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 MBD3L2Q8NHZ7 208 aaPredicted RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 LYPD6BQ8NI32 183 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 TSNAXQ99598 290 aaKnown RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 NKX6-2Q9C056 277 aaPredicted RBP18.19■□□□□ 0.5
TRIM54-202ENST00000380075 TLNRD1Q9H1K6 362 aa18.19■□□□□ 0.5
TRIM54-202ENST00000380075 GRPP07492 148 aa18.18■□□□□ 0.5
TRIM54-202ENST00000380075 CECR9P0C854 216 aa18.18■□□□□ 0.5
TRIM54-202ENST00000380075 SPP1P10451 314 aa18.18■□□□□ 0.5
TRIM54-202ENST00000380075 EWSR1Q01844 656 aaKnown RBP eCLIP18.18■□□□□ 0.5
TRIM54-202ENST00000380075 ID3Q02535 119 aa18.18■□□□□ 0.5
TRIM54-202ENST00000380075 EIF2S3LQ2VIR3 472 aaKnown RBP18.18■□□□□ 0.5
TRIM54-202ENST00000380075 PLEKHF2Q9H8W4 249 aa18.18■□□□□ 0.5
TRIM54-202ENST00000380075 LOC105371267A0A1B0GV96 52 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 AGFG2O95081 481 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 HAND1O96004 215 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 CGAP01215 116 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms