RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	SAK1	P38990	1142 aa		4.99	□□□□□ -1.61
NPL4	YBR170C	DUN1	P39009	513 aa		4.99	□□□□□ -1.61
NPL4	YBR170C	RAD26	P40352	1085 aa		4.99	□□□□□ -1.61
NPL4	YBR170C	IMA5	P40884	581 aa		4.99	□□□□□ -1.61
NPL4	YBR170C	ENP2	P48234	707 aa	Known RBP	4.99	□□□□□ -1.61
NPL4	YBR170C	EIS1	Q05050	843 aa	Known RBP	4.99	□□□□□ -1.61
NPL4	YBR170C	STP4	Q07351	490 aa		4.99	□□□□□ -1.61
NPL4	YBR170C	MCH5	Q08777	521 aa		4.99	□□□□□ -1.61
NPL4	YBR170C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
NPL4	YBR170C	RTK1	Q12100	620 aa	Predicted RBP	4.99	□□□□□ -1.61
NPL4	YBR170C	XRS2	P33301	854 aa		4.98	□□□□□ -1.61
NPL4	YBR170C	GID8	P40208	455 aa		4.98	□□□□□ -1.61
NPL4	YBR170C	MAD2	P40958	196 aa		4.98	□□□□□ -1.61
NPL4	YBR170C	SMK1	P41808	388 aa		4.98	□□□□□ -1.61
NPL4	YBR170C	BNA1	P47096	177 aa		4.98	□□□□□ -1.61
NPL4	YBR170C	EXG2	P52911	562 aa		4.98	□□□□□ -1.61
NPL4	YBR170C	TSR2	Q06672	205 aa	Known RBP	4.98	□□□□□ -1.61
NPL4	YBR170C	SOD2	P00447	233 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	CDC31	P06704	161 aa	Known RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	NCP1	P16603	691 aa	Known RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	IME1	P21190	360 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	YCL049C	P25577	312 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	ATG19	P35193	415 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	PPE1	P38796	400 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	LAM1	P38851	1228 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	SSP120	P39931	234 aa	Known RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	ESL1	P40456	1118 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	MND2	P40577	368 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	SRB7	P47822	140 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	CPR6	P53691	371 aa	Known RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	MUS81	Q04149	632 aa	Predicted RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	WHI4	Q07655	649 aa	Known RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	ISA1	Q07821	250 aa	Predicted RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	DIN7	Q12086	430 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	FOB1	O13329	566 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	MTF2	P10849	440 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	CBP3	P21560	335 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	TOD6	P34219	525 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	TAF5	P38129	798 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	PZF1	P39933	429 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	PUG1	P40100	303 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	PFA3	P42836	336 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	MNT2	P53059	558 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	MRPL13	Q02204	264 aa		4.97	□□□□□ -1.61
NPL4	YBR170C	RCR2	Q03446	210 aa	Known RBP	4.97	□□□□□ -1.61
NPL4	YBR170C	MCM3	P24279	971 aa	Known RBP	4.96	□□□□□ -1.62
NPL4	YBR170C	APL2	P36000	726 aa	Predicted RBP	4.96	□□□□□ -1.62
NPL4	YBR170C	STT3	P39007	718 aa	Known RBP	4.96	□□□□□ -1.62
NPL4	YBR170C	KAP123	P40069	1113 aa	Known RBP	4.96	□□□□□ -1.62
NPL4	YBR170C	VHS3	Q08438	674 aa		4.96	□□□□□ -1.62
NPL4	YBR170C	YDL177C	Q12257	170 aa		4.96	□□□□□ -1.62
NPL4	YBR170C	NUC1	P08466	329 aa		4.95	□□□□□ -1.62
NPL4	YBR170C	PET127	P32606	800 aa		4.95	□□□□□ -1.62
NPL4	YBR170C	VPS8	P39702	1274 aa		4.95	□□□□□ -1.62
NPL4	YBR170C	URM1	P40554	99 aa	Predicted RBP	4.95	□□□□□ -1.62
NPL4	YBR170C	YNR071C	P53757	342 aa		4.95	□□□□□ -1.62
NPL4	YBR170C	UPC2	Q12151	913 aa		4.95	□□□□□ -1.62
NPL4	YBR170C	DBP10	Q12389	995 aa	Known RBP	4.95	□□□□□ -1.62
NPL4	YBR170C	VPS5	Q92331	675 aa		4.95	□□□□□ -1.62
NPL4	YBR170C	PHO5	P00635	467 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	SNF1	P06782	633 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	PYC1	P11154	1178 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	FRS1	P15624	595 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	SAN1	P22470	610 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	STE14	P32584	239 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	SLC1	P33333	303 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	ETP1	P38748	585 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	PRP31	P49704	494 aa	Predicted RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	FOL2	P51601	243 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	ASI2	P53895	289 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	NSE5	Q03718	556 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	SGD1	Q06132	899 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	TFC6	Q06339	672 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	ADY3	Q07732	790 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	SDH5	Q08230	162 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	CYC1	P00044	109 aa	Predicted RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	GAL10	P04397	699 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	ADE2	P21264	571 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	UBC1	P21734	215 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	MUD2	P36084	527 aa	Known RBP	4.94	□□□□□ -1.62
NPL4	YBR170C	YLF2	P38746	405 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	VHR1	P40522	640 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	BUD8	P41698	603 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	TAF4	P50105	388 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	YBP2	P53169	641 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	ARG5,6	Q01217	863 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	TRI1	Q05024	226 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	TPO1	Q07824	586 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	TAD3	Q9URQ3	322 aa		4.94	□□□□□ -1.62
NPL4	YBR170C	RPS13	P05756	151 aa	Known RBP	4.93	□□□□□ -1.62
NPL4	YBR170C	POL3	P15436	1097 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	PRP4	P20053	465 aa	Known RBP	4.93	□□□□□ -1.62
NPL4	YBR170C	SIR1	P21691	654 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	CLB4	P24871	460 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	SED4	P25365	1065 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	YPT7	P32939	208 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	YHR033W	P38690	423 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	AXL2	P38928	823 aa		4.93	□□□□□ -1.62
NPL4	YBR170C	UPF3	P48412	387 aa	Known RBP	4.93	□□□□□ -1.62
NPL4	YBR170C	PEF1	P53238	335 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 61.5 ms