RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 KIF16BQ96L93 1317 aa22.23■■□□□ 1.15
PNKP-230ENST00000638016 ECE1P42892 770 aa22.22■■□□□ 1.15
PNKP-230ENST00000638016 PTPN12Q05209 780 aaKnown RBP22.22■■□□□ 1.15
PNKP-230ENST00000638016 IFFO2Q5TF58 517 aa22.22■■□□□ 1.15
PNKP-230ENST00000638016 FRAT1Q92837 279 aaPredicted RBP22.22■■□□□ 1.15
PNKP-230ENST00000638016 TRIM27P14373 513 aa22.21■■□□□ 1.15
PNKP-230ENST00000638016 MOB2Q70IA6 237 aa22.21■■□□□ 1.15
PNKP-230ENST00000638016 TDRD7Q8NHU6 1098 aaKnown RBP22.21■■□□□ 1.15
PNKP-230ENST00000638016 ZBED3Q96IU2 234 aaPredicted RBP22.21■■□□□ 1.15
PNKP-230ENST00000638016 PITPNM2Q9BZ72 1349 aa22.21■■□□□ 1.15
PNKP-230ENST00000638016 HIBADHP31937 336 aaKnown RBP22.2■■□□□ 1.14
PNKP-230ENST00000638016 CLUAP1Q96AJ1 413 aa22.2■■□□□ 1.14
PNKP-230ENST00000638016 AIDAQ96BJ3 306 aa22.2■■□□□ 1.14
PNKP-230ENST00000638016 SIL1Q9H173 461 aa22.2■■□□□ 1.14
PNKP-230ENST00000638016 HDAC9Q9UKV0 1011 aa22.2■■□□□ 1.14
PNKP-230ENST00000638016 ARAP2Q8WZ64 1704 aa22.2■■□□□ 1.14
PNKP-230ENST00000638016 EYA2O00167 538 aa22.19■■□□□ 1.14
PNKP-230ENST00000638016 PDE8BO95263 885 aa22.19■■□□□ 1.14
PNKP-230ENST00000638016 GRIK5Q16478 980 aa22.19■■□□□ 1.14
PNKP-230ENST00000638016 INTS3Q68E01 1043 aaKnown RBP22.19■■□□□ 1.14
PNKP-230ENST00000638016 ATG9AQ7Z3C6 839 aa22.19■■□□□ 1.14
PNKP-230ENST00000638016 HHIPL1Q96JK4 782 aa22.19■■□□□ 1.14
PNKP-230ENST00000638016 TSKSQ9UJT2 592 aa22.19■■□□□ 1.14
PNKP-230ENST00000638016 PA2G4Q9UQ80 394 aaKnown RBP22.19■■□□□ 1.14
PNKP-230ENST00000638016 FAM205AQ6ZU69 1335 aa22.18■■□□□ 1.14
PNKP-230ENST00000638016 LBX1P52954 281 aa22.18■■□□□ 1.14
PNKP-230ENST00000638016 C2orf69Q8N8R5 385 aa22.18■■□□□ 1.14
PNKP-230ENST00000638016 ARHGAP45Q92619 1136 aa22.18■■□□□ 1.14
PNKP-230ENST00000638016 ECM29Q5VYK3 1845 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 HSPA8P11142 646 aaKnown RBP22.17■■□□□ 1.14
PNKP-230ENST00000638016 FGFR2P21802 821 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 BCAMP50895 628 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 MAP2K1Q02750 393 aaPredicted RBP22.17■■□□□ 1.14
PNKP-230ENST00000638016 CFAP100Q494V2 611 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 MFSD14BQ5SR56 506 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 FBXO33Q7Z6M2 555 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 PAPPA2Q9BXP8 1791 aa22.17■■□□□ 1.14
PNKP-230ENST00000638016 CLRN2A0PK11 232 aa22.16■■□□□ 1.14
PNKP-230ENST00000638016 FAM155AB1AL88 458 aaPredicted RBP22.16■■□□□ 1.14
PNKP-230ENST00000638016 CTCFP49711 727 aaPredicted RBP22.16■■□□□ 1.14
PNKP-230ENST00000638016 CHAF1AQ13111 956 aaPredicted RBP22.16■■□□□ 1.14
PNKP-230ENST00000638016 DLGAP5Q15398 846 aa22.16■■□□□ 1.14
PNKP-230ENST00000638016 RGMBQ6NW40 437 aa22.16■■□□□ 1.14
PNKP-230ENST00000638016 ATF7IPQ6VMQ6 1270 aa22.16■■□□□ 1.14
PNKP-230ENST00000638016 FKBP1AP62942 108 aaKnown RBP22.15■■□□□ 1.14
PNKP-230ENST00000638016 PUM3Q15397 648 aaKnown RBP22.15■■□□□ 1.14
PNKP-230ENST00000638016 PRMT6Q96LA8 375 aaPredicted RBP22.15■■□□□ 1.14
PNKP-230ENST00000638016 FZD1Q9UP38 647 aa22.15■■□□□ 1.14
PNKP-230ENST00000638016 MAP2K2P36507 400 aa22.14■■□□□ 1.13
PNKP-230ENST00000638016 ZNF157P51786 506 aaPredicted RBP22.14■■□□□ 1.13
PNKP-230ENST00000638016 VPS37DQ86XT2 251 aa22.14■■□□□ 1.13
PNKP-230ENST00000638016 TNS4Q8IZW8 715 aa22.14■■□□□ 1.13
PNKP-230ENST00000638016 COL1A1P02452 1464 aaPredicted RBP22.14■■□□□ 1.13
PNKP-230ENST00000638016 ZBED9Q6R2W3 1325 aa22.13■■□□□ 1.13
PNKP-230ENST00000638016 SPDYE2BA6NHP3 402 aa22.13■■□□□ 1.13
PNKP-230ENST00000638016 UBE2Q2LH0YL09 131 aa22.13■■□□□ 1.13
PNKP-230ENST00000638016 SPDYE6P0CI01 402 aa22.13■■□□□ 1.13
PNKP-230ENST00000638016 PRKG1Q13976 671 aa22.13■■□□□ 1.13
PNKP-230ENST00000638016 TTF2Q9UNY4 1162 aaKnown RBP22.13■■□□□ 1.13
PNKP-230ENST00000638016 MYH13Q9UKX3 1938 aa22.13■■□□□ 1.13
PNKP-230ENST00000638016 IPO8O15397 1037 aaKnown RBP22.12■■□□□ 1.13
PNKP-230ENST00000638016 RBM5P52756 815 aaKnown RBP eCLIP22.12■■□□□ 1.13
PNKP-230ENST00000638016 CAVIN4Q5BKX8 364 aa22.12■■□□□ 1.13
PNKP-230ENST00000638016 APOBEC3FQ8IUX4 373 aaKnown RBP22.12■■□□□ 1.13
PNKP-230ENST00000638016 TMEM57Q8N5G2 664 aa22.12■■□□□ 1.13
PNKP-230ENST00000638016 MTMR14Q8NCE2 650 aa22.12■■□□□ 1.13
PNKP-230ENST00000638016 SLC10A3P09131 477 aa22.11■■□□□ 1.13
PNKP-230ENST00000638016 IFIT1P09914 478 aaKnown RBP22.11■■□□□ 1.13
PNKP-230ENST00000638016 MMP14P50281 582 aa22.11■■□□□ 1.13
PNKP-230ENST00000638016 RASAL3Q86YV0 1011 aa22.11■■□□□ 1.13
PNKP-230ENST00000638016 SSC5DA1L4H1 1573 aa22.11■■□□□ 1.13
PNKP-230ENST00000638016 FRAT2O75474 233 aaPredicted RBP22.1■■□□□ 1.13
PNKP-230ENST00000638016 CIAO1O76071 339 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 SLC5A1P13866 664 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 NOGQ13253 232 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 TTLL12Q14166 644 aaPredicted RBP22.1■■□□□ 1.13
PNKP-230ENST00000638016 ZKSCAN2Q63HK3 967 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 DEFB129Q9H1M3 183 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 VEZTQ9HBM0 779 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 PRDM10Q9NQV6 1147 aa22.1■■□□□ 1.13
PNKP-230ENST00000638016 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.1■■□□□ 1.13
PNKP-230ENST00000638016 GNAI3P08754 354 aa22.09■■□□□ 1.13
PNKP-230ENST00000638016 KIF23Q02241 960 aaPredicted RBP22.09■■□□□ 1.13
PNKP-230ENST00000638016 LPIN2Q92539 896 aa22.09■■□□□ 1.13
PNKP-230ENST00000638016 BEGAINQ9BUH8 593 aa22.09■■□□□ 1.13
PNKP-230ENST00000638016 SRGAP3O43295 1099 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 CAPN15O75808 1086 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 RLBP1P12271 317 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 ADORA1P30542 326 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 CRKP46108 304 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 ATP2B3Q16720 1220 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 TDRD3Q9H7E2 651 aaKnown RBP22.08■■□□□ 1.13
PNKP-230ENST00000638016 COPRSQ9NQ92 184 aa22.08■■□□□ 1.13
PNKP-230ENST00000638016 PNMA6EA0A0J9YXQ4 647 aa22.07■■□□□ 1.12
PNKP-230ENST00000638016 FKBP1BP68106 108 aa22.07■■□□□ 1.12
PNKP-230ENST00000638016 CDAN1Q8IWY9 1227 aa22.07■■□□□ 1.12
PNKP-230ENST00000638016 CEP126Q9P2H0 1117 aa22.07■■□□□ 1.12
PNKP-230ENST00000638016 CASP8AP2Q9UKL3 1982 aa22.07■■□□□ 1.12
PNKP-230ENST00000638016 IL15P40933 162 aaPredicted RBP22.06■■□□□ 1.12
PNKP-230ENST00000638016 MTX1Q13505 466 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms