RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 FBXO33Q7Z6M2 555 aa20.17■□□□□ 0.82
TRIM28-206ENST00000595974 ITPRIPQ8IWB1 547 aa20.17■□□□□ 0.82
TRIM28-206ENST00000595974 CERS5Q8N5B7 392 aa20.17■□□□□ 0.82
TRIM28-206ENST00000595974 MKRN1Q9UHC7 482 aaKnown RBP20.17■□□□□ 0.82
TRIM28-206ENST00000595974 ABT1Q9ULW3 272 aaKnown RBP20.17■□□□□ 0.82
TRIM28-206ENST00000595974 RASSF10A6NK89 507 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 CELF2O95319 508 aaKnown RBP20.16■□□□□ 0.82
TRIM28-206ENST00000595974 RLBP1P12271 317 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 SLC5A1P13866 664 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 CST9Q5W186 159 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 USP48Q86UV5 1035 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 SULF1Q8IWU6 871 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 LPIN2Q92539 896 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 CEP126Q9P2H0 1117 aa20.16■□□□□ 0.82
TRIM28-206ENST00000595974 PA2G4Q9UQ80 394 aaKnown RBP20.16■□□□□ 0.82
TRIM28-206ENST00000595974 ASTN2O75129 1339 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-206ENST00000595974 MS4A1P11836 297 aa20.15■□□□□ 0.82
TRIM28-206ENST00000595974 ANGEL2Q5VTE6 544 aaKnown RBP20.15■□□□□ 0.82
TRIM28-206ENST00000595974 ADM5C9JUS6 153 aa20.14■□□□□ 0.81
TRIM28-206ENST00000595974 WNT10BO00744 389 aa20.14■□□□□ 0.81
TRIM28-206ENST00000595974 ATP2B3Q16720 1220 aa20.14■□□□□ 0.81
TRIM28-206ENST00000595974 RCAN3Q9UKA8 241 aa20.14■□□□□ 0.81
TRIM28-206ENST00000595974 JAG2Q9Y219 1238 aa20.14■□□□□ 0.81
TRIM28-206ENST00000595974 TLL2Q9Y6L7 1015 aa20.14■□□□□ 0.81
TRIM28-206ENST00000595974 THSD7BQ9C0I4 1608 aa20.13■□□□□ 0.81
TRIM28-206ENST00000595974 DEFB115Q30KQ5 88 aa20.13■□□□□ 0.81
TRIM28-206ENST00000595974 NBPF9Q3BBW0 867 aa20.13■□□□□ 0.81
TRIM28-206ENST00000595974 MFSD14BQ5SR56 506 aa20.13■□□□□ 0.81
TRIM28-206ENST00000595974 ZNF408Q9H9D4 720 aa20.13■□□□□ 0.81
TRIM28-206ENST00000595974 FRAT2O75474 233 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-206ENST00000595974 BCAMP50895 628 aa20.12■□□□□ 0.81
TRIM28-206ENST00000595974 MTMR14Q8NCE2 650 aa20.12■□□□□ 0.81
TRIM28-206ENST00000595974 TBC1D22AQ8WUA7 517 aa20.12■□□□□ 0.81
TRIM28-206ENST00000595974 ZBED3Q96IU2 234 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-206ENST00000595974 PNMA6EA0A0J9YXQ4 647 aa20.11■□□□□ 0.81
TRIM28-206ENST00000595974 SAPCD2Q86UD0 394 aa20.11■□□□□ 0.81
TRIM28-206ENST00000595974 IQSEC3Q9UPP2 1182 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-206ENST00000595974 F8W031 263 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-206ENST00000595974 ZBTB7BO15156 539 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-206ENST00000595974 VEGFBP49765 207 aa20.1■□□□□ 0.81
TRIM28-206ENST00000595974 DLGAP5Q15398 846 aa20.1■□□□□ 0.81
TRIM28-206ENST00000595974 PANK1Q8TE04 598 aa20.1■□□□□ 0.81
TRIM28-206ENST00000595974 HHIPL1Q96JK4 782 aa20.1■□□□□ 0.81
TRIM28-206ENST00000595974 PAPPA2Q9BXP8 1791 aa20.1■□□□□ 0.81
TRIM28-206ENST00000595974 COL1A1P02452 1464 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-206ENST00000595974 CHAF1AQ13111 956 aaPredicted RBP20.09■□□□□ 0.81
TRIM28-206ENST00000595974 DLK2Q6UY11 383 aa20.09■□□□□ 0.81
TRIM28-206ENST00000595974 APOBEC3FQ8IUX4 373 aaKnown RBP20.09■□□□□ 0.81
TRIM28-206ENST00000595974 CDCA5Q96FF9 252 aa20.09■□□□□ 0.81
TRIM28-206ENST00000595974 ECE1P42892 770 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 POLA2Q14181 598 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 CFAP100Q494V2 611 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 SSH3Q8TE77 659 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 C1orf115Q9H7X2 142 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 GBA2Q9HCG7 927 aaPredicted RBP20.08■□□□□ 0.81
TRIM28-206ENST00000595974 SERPINA10Q9UK55 444 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 TTF2Q9UNY4 1162 aaKnown RBP20.08■□□□□ 0.81
TRIM28-206ENST00000595974 AKAP2Q9Y2D5 859 aa20.08■□□□□ 0.81
TRIM28-206ENST00000595974 SPDYE2BA6NHP3 402 aa20.07■□□□□ 0.8
TRIM28-206ENST00000595974 ZBTB22O15209 634 aa20.07■□□□□ 0.8
TRIM28-206ENST00000595974 SPDYE6P0CI01 402 aa20.07■□□□□ 0.8
TRIM28-206ENST00000595974 ATP8B2P98198 1209 aa20.07■□□□□ 0.8
TRIM28-206ENST00000595974 PAXIP1Q6ZW49 1069 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-206ENST00000595974 GNL3LQ9NVN8 582 aaKnown RBP20.07■□□□□ 0.8
TRIM28-206ENST00000595974 SUGT1Q9Y2Z0 365 aa20.07■□□□□ 0.8
TRIM28-206ENST00000595974 WDR33Q9C0J8 1336 aaKnown RBP20.06■□□□□ 0.8
TRIM28-206ENST00000595974 MYO1BO43795 1136 aa20.06■□□□□ 0.8
TRIM28-206ENST00000595974 TFCP2Q12800 502 aa20.06■□□□□ 0.8
TRIM28-206ENST00000595974 G3BP1Q13283 466 aaKnown RBP eCLIP20.06■□□□□ 0.88e-9■■□□□ 11.6
TRIM28-206ENST00000595974 MVPQ14764 893 aaKnown RBP20.06■□□□□ 0.8
TRIM28-206ENST00000595974 C2orf69Q8N8R5 385 aa20.06■□□□□ 0.8
TRIM28-206ENST00000595974 WDR66Q8TBY9 1149 aa20.06■□□□□ 0.8
TRIM28-206ENST00000595974 CAPNS2Q96L46 248 aa20.06■□□□□ 0.8
TRIM28-206ENST00000595974 MAST3O60307 1309 aa20.05■□□□□ 0.8
TRIM28-206ENST00000595974 A0A1B0GUL7 405 aa20.05■□□□□ 0.8
TRIM28-206ENST00000595974 SEMA3EO15041 775 aa20.05■□□□□ 0.8
TRIM28-206ENST00000595974 RBM5P52756 815 aaKnown RBP eCLIP20.05■□□□□ 0.8
TRIM28-206ENST00000595974 HUNKP57058 714 aa20.05■□□□□ 0.8
TRIM28-206ENST00000595974 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-206ENST00000595974 DDX19BQ9UMR2 479 aa20.05■□□□□ 0.8
TRIM28-206ENST00000595974 HSPA1AP0DMV8 641 aaKnown RBP20.04■□□□□ 0.8
TRIM28-206ENST00000595974 HSPA1BP0DMV9 641 aaKnown RBP20.04■□□□□ 0.8
TRIM28-206ENST00000595974 ADORA1P30542 326 aa20.04■□□□□ 0.8
TRIM28-206ENST00000595974 PHKA1P46020 1223 aa20.04■□□□□ 0.8
TRIM28-206ENST00000595974 FKBP1BP68106 108 aa20.04■□□□□ 0.8
TRIM28-206ENST00000595974 HDLBPQ00341 1268 aaKnown RBP20.04■□□□□ 0.8
TRIM28-206ENST00000595974 CYP4F22Q6NT55 531 aa20.04■□□□□ 0.8
TRIM28-206ENST00000595974 SCAF8Q9UPN6 1271 aaKnown RBP20.04■□□□□ 0.8
TRIM28-206ENST00000595974 PCDHAC2Q9Y5I4 1007 aa20.04■□□□□ 0.8
TRIM28-206ENST00000595974 CRKP46108 304 aa20.03■□□□□ 0.8
TRIM28-206ENST00000595974 GRIK5Q16478 980 aa20.03■□□□□ 0.8
TRIM28-206ENST00000595974 CCDC102BQ68D86 513 aa20.03■□□□□ 0.8
TRIM28-206ENST00000595974 CEP85Q6P2H3 762 aa20.03■□□□□ 0.8
TRIM28-206ENST00000595974 PRMT6Q96LA8 375 aaPredicted RBP20.03■□□□□ 0.8
TRIM28-206ENST00000595974 DENND2AQ9ULE3 1009 aa20.03■□□□□ 0.8
TRIM28-206ENST00000595974 PPP2R3BQ9Y5P8 575 aa20.03■□□□□ 0.8
TRIM28-206ENST00000595974 NF2P35240 595 aa20.02■□□□□ 0.8
TRIM28-206ENST00000595974 TIMM10P62072 90 aa20.02■□□□□ 0.8
TRIM28-206ENST00000595974 CHMP4BQ9H444 224 aaKnown RBP20.02■□□□□ 0.8
TRIM28-206ENST00000595974 COG6Q9Y2V7 657 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms