RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 GNAI3P08754 354 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 RFX5P48382 616 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-203ENST00000593582 HUNKP57058 714 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 FKBP1AP62942 108 aaKnown RBP19.07■□□□□ 0.64
TRIM28-203ENST00000593582 MAP2K1Q02750 393 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-203ENST00000593582 PTPN12Q05209 780 aaKnown RBP19.07■□□□□ 0.64
TRIM28-203ENST00000593582 CAVIN4Q5BKX8 364 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 CERS5Q8N5B7 392 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 TDRD7Q8NHU6 1098 aaKnown RBP19.07■□□□□ 0.64
TRIM28-203ENST00000593582 CDCA5Q96FF9 252 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 JAG2Q9Y219 1238 aa19.07■□□□□ 0.64
TRIM28-203ENST00000593582 ZNF646O15015 1829 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-203ENST00000593582 PUM3Q15397 648 aaKnown RBP19.06■□□□□ 0.64
TRIM28-203ENST00000593582 FAM205AQ6ZU69 1335 aa19.05■□□□□ 0.64
TRIM28-203ENST00000593582 F8W031 263 aaPredicted RBP19.05■□□□□ 0.64
TRIM28-203ENST00000593582 DLGAP5Q15398 846 aa19.05■□□□□ 0.64
TRIM28-203ENST00000593582 FBXO33Q7Z6M2 555 aa19.05■□□□□ 0.64
TRIM28-203ENST00000593582 WBP1LQ9NX94 342 aa19.05■□□□□ 0.64
TRIM28-203ENST00000593582 FBXO3Q9UK99 471 aa19.05■□□□□ 0.64
TRIM28-203ENST00000593582 FRAT2O75474 233 aaPredicted RBP19.04■□□□□ 0.64
TRIM28-203ENST00000593582 IFIT1P09914 478 aaKnown RBP19.04■□□□□ 0.64
TRIM28-203ENST00000593582 MAP2K2P36507 400 aa19.04■□□□□ 0.64
TRIM28-203ENST00000593582 MFSD14BQ5SR56 506 aa19.04■□□□□ 0.64
TRIM28-203ENST00000593582 ZKSCAN2Q63HK3 967 aa19.04■□□□□ 0.64
TRIM28-203ENST00000593582 CLUAP1Q96AJ1 413 aa19.04■□□□□ 0.64
TRIM28-203ENST00000593582 SIL1Q9H173 461 aa19.04■□□□□ 0.64
TRIM28-203ENST00000593582 POLR2AP24928 1970 aaKnown RBP19.03■□□□□ 0.64
TRIM28-203ENST00000593582 FOXN1O15353 648 aa19.03■□□□□ 0.64
TRIM28-203ENST00000593582 CIAO1O76071 339 aa19.03■□□□□ 0.64
TRIM28-203ENST00000593582 COL13A1Q5TAT6 717 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-203ENST00000593582 ATG9AQ7Z3C6 839 aa19.03■□□□□ 0.64
TRIM28-203ENST00000593582 APOBEC3FQ8IUX4 373 aaKnown RBP19.03■□□□□ 0.64
TRIM28-203ENST00000593582 MTMR14Q8NCE2 650 aa19.03■□□□□ 0.64
TRIM28-203ENST00000593582 ZBED3Q96IU2 234 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-203ENST00000593582 BEGAINQ9BUH8 593 aa19.03■□□□□ 0.64
TRIM28-203ENST00000593582 SCAF8Q9UPN6 1271 aaKnown RBP19.03■□□□□ 0.64
TRIM28-203ENST00000593582 MYO1BO43795 1136 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 AOC2O75106 756 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 SLC5A1P13866 664 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 FGFR2P21802 821 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 LPIN2Q92539 896 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 CEP126Q9P2H0 1117 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 TNNQ9UQP3 1299 aa19.02■□□□□ 0.64
TRIM28-203ENST00000593582 IL15P40933 162 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-203ENST00000593582 CTCFP49711 727 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-203ENST00000593582 BCAMP50895 628 aa19.01■□□□□ 0.63
TRIM28-203ENST00000593582 RBM5P52756 815 aaKnown RBP eCLIP19.01■□□□□ 0.632e-6■■■■□ 22.7
TRIM28-203ENST00000593582 FKBP1BP68106 108 aa19.01■□□□□ 0.63
TRIM28-203ENST00000593582 CFAP100Q494V2 611 aa19.01■□□□□ 0.63
TRIM28-203ENST00000593582 RGMBQ6NW40 437 aa19.01■□□□□ 0.63
TRIM28-203ENST00000593582 IQSEC3Q9UPP2 1182 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-203ENST00000593582 SPDYE2BA6NHP3 402 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 SRGAP3O43295 1099 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 GNAI2P04899 355 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 SPDYE6P0CI01 402 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 NF2P35240 595 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 CHAF1AQ13111 956 aaPredicted RBP19■□□□□ 0.63
TRIM28-203ENST00000593582 NOGQ13253 232 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 PRAMEF18Q5VWM3 479 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 FTSJ3Q8IY81 847 aaKnown RBP19■□□□□ 0.63
TRIM28-203ENST00000593582 TBC1D22AQ8WUA7 517 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 CCDC102AQ96A19 550 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 COPRSQ9NQ92 184 aa19■□□□□ 0.63
TRIM28-203ENST00000593582 TTF2Q9UNY4 1162 aaKnown RBP19■□□□□ 0.63
TRIM28-203ENST00000593582 PA2G4Q9UQ80 394 aaKnown RBP19■□□□□ 0.63
TRIM28-203ENST00000593582 ZNF157P51786 506 aaPredicted RBP18.99■□□□□ 0.63
TRIM28-203ENST00000593582 IFFO2Q5TF58 517 aa18.99■□□□□ 0.63
TRIM28-203ENST00000593582 TMEM57Q8N5G2 664 aa18.99■□□□□ 0.63
TRIM28-203ENST00000593582 SERPINA10Q9UK55 444 aa18.99■□□□□ 0.63
TRIM28-203ENST00000593582 THSD7BQ9C0I4 1608 aa18.99■□□□□ 0.63
TRIM28-203ENST00000593582 MTX1Q13505 466 aa18.98■□□□□ 0.63
TRIM28-203ENST00000593582 ATP2B3Q16720 1220 aa18.98■□□□□ 0.63
TRIM28-203ENST00000593582 PRMT6Q96LA8 375 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-203ENST00000593582 PCDHAC2Q9Y5I4 1007 aa18.98■□□□□ 0.63
TRIM28-203ENST00000593582 TTLL12Q14166 644 aaPredicted RBP18.97■□□□□ 0.63
TRIM28-203ENST00000593582 DEFB129Q9H1M3 183 aa18.97■□□□□ 0.63
TRIM28-203ENST00000593582 PRDM10Q9NQV6 1147 aa18.97■□□□□ 0.63
TRIM28-203ENST00000593582 CLRN2A0PK11 232 aa18.96■□□□□ 0.63
TRIM28-203ENST00000593582 DZIP1LQ8IYY4 767 aaKnown RBP18.96■□□□□ 0.63
TRIM28-203ENST00000593582 VEZTQ9HBM0 779 aa18.96■□□□□ 0.63
TRIM28-203ENST00000593582 GNL3LQ9NVN8 582 aaKnown RBP18.96■□□□□ 0.63
TRIM28-203ENST00000593582 PPP2R3BQ9Y5P8 575 aa18.96■□□□□ 0.63
TRIM28-203ENST00000593582 COL1A1P02452 1464 aaPredicted RBP18.96■□□□□ 0.63
TRIM28-203ENST00000593582 PAPPA2Q9BXP8 1791 aa18.96■□□□□ 0.63
TRIM28-203ENST00000593582 FAM155AB1AL88 458 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-203ENST00000593582 CA12O43570 354 aa18.95■□□□□ 0.62
TRIM28-203ENST00000593582 LBX1P52954 281 aa18.95■□□□□ 0.62
TRIM28-203ENST00000593582 TNS4Q8IZW8 715 aa18.95■□□□□ 0.62
TRIM28-203ENST00000593582 SUGT1Q9Y2Z0 365 aa18.95■□□□□ 0.62
TRIM28-203ENST00000593582 SLC10A3P09131 477 aa18.94■□□□□ 0.62
TRIM28-203ENST00000593582 CRKP46108 304 aa18.94■□□□□ 0.62
TRIM28-203ENST00000593582 HDLBPQ00341 1268 aaKnown RBP18.94■□□□□ 0.62
TRIM28-203ENST00000593582 GRIK5Q16478 980 aa18.94■□□□□ 0.62
TRIM28-203ENST00000593582 MOB2Q70IA6 237 aa18.94■□□□□ 0.62
TRIM28-203ENST00000593582 ITPRIPQ8IWB1 547 aa18.94■□□□□ 0.62
TRIM28-203ENST00000593582 WDR66Q8TBY9 1149 aa18.94■□□□□ 0.62
TRIM28-203ENST00000593582 UBE2Q2LH0YL09 131 aa18.93■□□□□ 0.62
TRIM28-203ENST00000593582 HSPA8P11142 646 aaKnown RBP18.93■□□□□ 0.62
TRIM28-203ENST00000593582 TNFAIP1Q13829 316 aa18.93■□□□□ 0.62
TRIM28-203ENST00000593582 ARMC9Q7Z3E5 817 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms