RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TBC1D8O95759 1140 aa26.73■■□□□ 1.87
VPS53-216ENST00000574029 PRKG1Q13976 671 aa26.73■■□□□ 1.87
VPS53-216ENST00000574029 CCDC57Q2TAC2 916 aa26.73■■□□□ 1.87
VPS53-216ENST00000574029 ZNF594Q96JF6 807 aaPredicted RBP26.73■■□□□ 1.87
VPS53-216ENST00000574029 DEFB129Q9H1M3 183 aa26.73■■□□□ 1.87
VPS53-216ENST00000574029 ALDH1L1O75891 902 aa26.72■■□□□ 1.87
VPS53-216ENST00000574029 LDHAL6AQ6ZMR3 332 aa26.72■■□□□ 1.87
VPS53-216ENST00000574029 SREBF2Q12772 1141 aa26.71■■□□□ 1.87
VPS53-216ENST00000574029 MKRN3Q13064 507 aaKnown RBP26.71■■□□□ 1.87
VPS53-216ENST00000574029 NOM1Q5C9Z4 860 aaKnown RBP26.71■■□□□ 1.87
VPS53-216ENST00000574029 ZNF296Q8WUU4 475 aaPredicted RBP26.71■■□□□ 1.87
VPS53-216ENST00000574029 C9orf78Q9NZ63 289 aaPredicted RBP26.71■■□□□ 1.87
VPS53-216ENST00000574029 ANGEL1Q9UNK9 670 aaKnown RBP26.71■■□□□ 1.87
VPS53-216ENST00000574029 PCDHAC2Q9Y5I4 1007 aa26.71■■□□□ 1.87
VPS53-216ENST00000574029 PPP2R3BQ9Y5P8 575 aa26.71■■□□□ 1.87
VPS53-216ENST00000574029 MAP3K11Q16584 847 aa26.7■■□□□ 1.86
VPS53-216ENST00000574029 CFAP100Q494V2 611 aa26.7■■□□□ 1.86
VPS53-216ENST00000574029 TAF7LQ5H9L4 462 aa26.7■■□□□ 1.86
VPS53-216ENST00000574029 CFHR5Q9BXR6 569 aa26.7■■□□□ 1.86
VPS53-216ENST00000574029 CNNM1Q9NRU3 951 aa26.7■■□□□ 1.86
VPS53-216ENST00000574029 SSC5DA1L4H1 1573 aa26.69■■□□□ 1.86
VPS53-216ENST00000574029 F8W031 263 aaPredicted RBP26.69■■□□□ 1.86
VPS53-216ENST00000574029 PLIN1O60240 522 aa26.69■■□□□ 1.86
VPS53-216ENST00000574029 PKN2Q16513 984 aaKnown RBP26.69■■□□□ 1.86
VPS53-216ENST00000574029 SPRYD7Q5W111 196 aa26.69■■□□□ 1.86
VPS53-216ENST00000574029 FZD1Q9UP38 647 aa26.69■■□□□ 1.86
VPS53-216ENST00000574029 LAMB1P07942 1786 aa26.69■■□□□ 1.86
VPS53-216ENST00000574029 ZNF316A6NFI3 1004 aaPredicted RBP26.68■■□□□ 1.86
VPS53-216ENST00000574029 SPDYE2BA6NHP3 402 aa26.68■■□□□ 1.86
VPS53-216ENST00000574029 MYO1BO43795 1136 aa26.68■■□□□ 1.86
VPS53-216ENST00000574029 SPDYE6P0CI01 402 aa26.68■■□□□ 1.86
VPS53-216ENST00000574029 SOX10P56693 466 aa26.68■■□□□ 1.86
VPS53-216ENST00000574029 PRMT6Q96LA8 375 aaPredicted RBP26.68■■□□□ 1.86
VPS53-216ENST00000574029 SRCIN1Q9C0H9 1055 aa26.68■■□□□ 1.86
VPS53-216ENST00000574029 GPR25O00155 361 aa26.67■■□□□ 1.86
VPS53-216ENST00000574029 HPS5Q9UPZ3 1129 aa26.67■■□□□ 1.86
VPS53-216ENST00000574029 JAG2Q9Y219 1238 aa26.67■■□□□ 1.86
VPS53-216ENST00000574029 FAM205AQ6ZU69 1335 aa26.66■■□□□ 1.86
VPS53-216ENST00000574029 SLC4A10Q6U841 1118 aa26.66■■□□□ 1.86
VPS53-216ENST00000574029 KAZALD1Q96I82 304 aa26.66■■□□□ 1.86
VPS53-216ENST00000574029 CLRN2A0PK11 232 aa26.65■■□□□ 1.86
VPS53-216ENST00000574029 UBE4AQ14139 1066 aa26.65■■□□□ 1.86
VPS53-216ENST00000574029 FAM9BQ8IZU0 186 aa26.65■■□□□ 1.86
VPS53-216ENST00000574029 TDRD7Q8NHU6 1098 aaKnown RBP26.65■■□□□ 1.86
VPS53-216ENST00000574029 SUCLG2Q96I99 432 aa26.65■■□□□ 1.86
VPS53-216ENST00000574029 ARAP2Q8WZ64 1704 aa26.65■■□□□ 1.86
VPS53-216ENST00000574029 AOX1Q06278 1338 aa26.65■■□□□ 1.86
VPS53-216ENST00000574029 UNCXA6NJT0 531 aa26.64■■□□□ 1.86
VPS53-216ENST00000574029 PPP1R12BO60237 982 aaPredicted RBP26.64■■□□□ 1.86
VPS53-216ENST00000574029 SUPT20HL1Q3ZLR7 823 aa26.64■■□□□ 1.86
VPS53-216ENST00000574029 SLC10A4Q96EP9 437 aa26.64■■□□□ 1.86
VPS53-216ENST00000574029 UTYO14607 1347 aa26.64■■□□□ 1.85
VPS53-216ENST00000574029 INHBEP58166 350 aa26.63■■□□□ 1.85
VPS53-216ENST00000574029 PUS3Q9BZE2 481 aaKnown RBP26.63■■□□□ 1.85
VPS53-216ENST00000574029 R3HDMLQ9H3Y0 253 aa26.63■■□□□ 1.85
VPS53-216ENST00000574029 ZNF521Q96K83 1311 aa26.63■■□□□ 1.85
VPS53-216ENST00000574029 MANSC4A6NHS7 340 aaPredicted RBP26.62■■□□□ 1.85
VPS53-216ENST00000574029 ALDH1A1P00352 501 aa26.62■■□□□ 1.85
VPS53-216ENST00000574029 NBPF7P0C2Y1 421 aaPredicted RBP26.62■■□□□ 1.85
VPS53-216ENST00000574029 ZBTB48P10074 688 aaPredicted RBP26.62■■□□□ 1.85
VPS53-216ENST00000574029 CLMNQ96JQ2 1002 aa26.62■■□□□ 1.85
VPS53-216ENST00000574029 FAM84BQ96KN1 310 aaPredicted RBP26.62■■□□□ 1.85
VPS53-216ENST00000574029 VEZTQ9HBM0 779 aa26.62■■□□□ 1.85
VPS53-216ENST00000574029 FKTNO75072 461 aa26.61■■□□□ 1.85
VPS53-216ENST00000574029 HIBADHP31937 336 aaKnown RBP26.61■■□□□ 1.85
VPS53-216ENST00000574029 GYG1P46976 350 aa26.61■■□□□ 1.85
VPS53-216ENST00000574029 RBM5P52756 815 aaKnown RBP eCLIP26.61■■□□□ 1.85
VPS53-216ENST00000574029 MFSD14BQ5SR56 506 aa26.61■■□□□ 1.85
VPS53-216ENST00000574029 NBPF12Q5TAG4 269 aaPredicted RBP26.61■■□□□ 1.85
VPS53-216ENST00000574029 WNK4Q96J92 1243 aa26.61■■□□□ 1.85
VPS53-216ENST00000574029 RIPOR2Q9Y4F9 1068 aa26.61■■□□□ 1.85
VPS53-216ENST00000574029 TNRC18O15417 2968 aaPredicted RBP26.61■■□□□ 1.85
VPS53-216ENST00000574029 IFNL1Q8IU54 200 aa26.6■■□□□ 1.85
VPS53-216ENST00000574029 SERPINA10Q9UK55 444 aa26.6■■□□□ 1.85
VPS53-216ENST00000574029 MROH5Q6ZUA9 1318 aa26.6■■□□□ 1.85
VPS53-216ENST00000574029 USP2O75604 605 aaPredicted RBP26.59■■□□□ 1.85
VPS53-216ENST00000574029 RASA3Q14644 834 aa26.59■■□□□ 1.85
VPS53-216ENST00000574029 RABL6Q3YEC7 729 aaPredicted RBP26.59■■□□□ 1.85
VPS53-216ENST00000574029 FBXO46Q6PJ61 603 aaPredicted RBP26.59■■□□□ 1.85
VPS53-216ENST00000574029 TTF2Q9UNY4 1162 aaKnown RBP26.59■■□□□ 1.85
VPS53-216ENST00000574029 IREB2P48200 963 aaKnown RBP26.58■■□□□ 1.85
VPS53-216ENST00000574029 SPDYE2Q495Y8 402 aa26.58■■□□□ 1.85
VPS53-216ENST00000574029 ZNF70Q9UC06 446 aaPredicted RBP26.58■■□□□ 1.85
VPS53-216ENST00000574029 MRPL50Q8N5N7 158 aaKnown RBP26.57■■□□□ 1.84
VPS53-216ENST00000574029 BICC1Q9H694 974 aaKnown RBP26.57■■□□□ 1.84
VPS53-216ENST00000574029 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.57■■□□□ 1.84
VPS53-216ENST00000574029 OTOFQ9HC10 1997 aa26.57■■□□□ 1.84
VPS53-216ENST00000574029 TNFAIP1Q13829 316 aa26.56■■□□□ 1.84
VPS53-216ENST00000574029 ANKRD13AQ8IZ07 590 aa26.56■■□□□ 1.84
VPS53-216ENST00000574029 IGF2BP3O00425 579 aaKnown RBP eCLIP26.55■■□□□ 1.84
VPS53-216ENST00000574029 FBXO33Q7Z6M2 555 aa26.55■■□□□ 1.84
VPS53-216ENST00000574029 ANKRD44Q8N8A2 993 aa26.55■■□□□ 1.84
VPS53-216ENST00000574029 TDRD3Q9H7E2 651 aaKnown RBP26.55■■□□□ 1.84
VPS53-216ENST00000574029 GJA5P36382 358 aa26.54■■□□□ 1.84
VPS53-216ENST00000574029 DZIP1LQ8IYY4 767 aaKnown RBP26.54■■□□□ 1.84
VPS53-216ENST00000574029 CRKP46108 304 aa26.53■■□□□ 1.84
VPS53-216ENST00000574029 LRRC24Q50LG9 513 aa26.53■■□□□ 1.84
VPS53-216ENST00000574029 TEPSINQ96N21 525 aa26.53■■□□□ 1.84
VPS53-216ENST00000574029 PTPRCP08575 1304 aa26.53■■□□□ 1.84
VPS53-216ENST00000574029 VGLL2Q8N8G2 317 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 502 ms