RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 NIP7Q9Y221 180 aaKnown RBP eCLIP7.72□□□□□ -1.17
USP3-215ENST00000559771 ZNF541Q9H0D2 1346 aa7.72□□□□□ -1.17
USP3-215ENST00000559771 LTBP1Q14766 1721 aa7.72□□□□□ -1.17
USP3-215ENST00000559771 PROCP04070 461 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 NPR1P16066 1061 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 EIF4A1P60842 406 aaKnown RBP7.71□□□□□ -1.18
USP3-215ENST00000559771 PTGDRQ13258 359 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 PLA2G4EQ3MJ16 856 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 CRY2Q49AN0 593 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 TTLL7Q6ZT98 887 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 LRP10Q7Z4F1 713 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 UBN2Q6ZU65 1347 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 PASKQ96RG2 1323 aa7.71□□□□□ -1.18
USP3-215ENST00000559771 FAM177BA6PVY3 158 aa7.7□□□□□ -1.18
USP3-215ENST00000559771 MSTNO14793 375 aa7.7□□□□□ -1.18
USP3-215ENST00000559771 FKBP4Q02790 459 aaKnown RBP eCLIP7.7□□□□□ -1.18
USP3-215ENST00000559771 CCDC93Q567U6 631 aa7.7□□□□□ -1.18
USP3-215ENST00000559771 TPTE2Q6XPS3 522 aa7.7□□□□□ -1.18
USP3-215ENST00000559771 NUTM1Q86Y26 1132 aa7.7□□□□□ -1.18
USP3-215ENST00000559771 PURBQ96QR8 312 aaKnown RBP7.7□□□□□ -1.18
USP3-215ENST00000559771 ZNF277Q9NRM2 450 aaPredicted RBP7.7□□□□□ -1.18
USP3-215ENST00000559771 ZNF652Q9Y2D9 606 aa7.7□□□□□ -1.18
USP3-215ENST00000559771 RIC1Q4ADV7 1423 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 LAMB2P55268 1798 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 ERVV-1B6SEH8 477 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 FZD9O00144 591 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 HSPA1AP0DMV8 641 aaKnown RBP7.69□□□□□ -1.18
USP3-215ENST00000559771 HSPA1BP0DMV9 641 aaKnown RBP7.69□□□□□ -1.18
USP3-215ENST00000559771 NFE2L2Q16236 605 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 SOGA3Q5TF21 947 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 SUSD4Q5VX71 490 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 MRPL14Q6P1L8 145 aaKnown RBP7.69□□□□□ -1.18
USP3-215ENST00000559771 NPM2Q86SE8 214 aaKnown RBP7.69□□□□□ -1.18
USP3-215ENST00000559771 ZNF34Q8IZ26 560 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 NGEFQ8N5V2 710 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 TAF1DQ9H5J8 278 aaPredicted RBP7.69□□□□□ -1.18
USP3-215ENST00000559771 MAP3K15Q6ZN16 1313 aa7.69□□□□□ -1.18
USP3-215ENST00000559771 NPHP1O15259 732 aa7.68□□□□□ -1.18
USP3-215ENST00000559771 HOXA10P31260 410 aaPredicted RBP7.68□□□□□ -1.18
USP3-215ENST00000559771 PROSER3Q2NL68 480 aa7.68□□□□□ -1.18
USP3-215ENST00000559771 SYNE4Q8N205 404 aa7.68□□□□□ -1.18
USP3-215ENST00000559771 RRP7AQ9Y3A4 280 aaKnown RBP7.68□□□□□ -1.18
USP3-215ENST00000559771 ANKRD36CQ5JPF3 1778 aa7.68□□□□□ -1.18
USP3-215ENST00000559771 IBTKQ9P2D0 1353 aaPredicted RBP7.68□□□□□ -1.18
USP3-215ENST00000559771 NTSR2O95665 410 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 MYL6BP14649 208 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 GPTP24298 496 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 ALDH1B1P30837 517 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 IARSP41252 1262 aaKnown RBP7.67□□□□□ -1.18
USP3-215ENST00000559771 LDHDQ86WU2 507 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 RTKN2Q8IZC4 609 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 PNISRQ8TF01 805 aaKnown RBP7.67□□□□□ -1.18
USP3-215ENST00000559771 PSMD1Q99460 953 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 ZBTB3Q9H5J0 574 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 MKRN1Q9UHC7 482 aaKnown RBP7.67□□□□□ -1.18
USP3-215ENST00000559771 CNTNAP1P78357 1384 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 COL4A1P02462 1669 aa7.67□□□□□ -1.18
USP3-215ENST00000559771 TAF1P21675 1872 aa7.66□□□□□ -1.18
USP3-215ENST00000559771 IQCA1LA6NCM1 817 aa7.66□□□□□ -1.18
USP3-215ENST00000559771 ANXA1P04083 346 aa7.66□□□□□ -1.18
USP3-215ENST00000559771 RNFT1Q5M7Z0 435 aa7.66□□□□□ -1.18
USP3-215ENST00000559771 GIGYF2Q6Y7W6 1299 aaKnown RBP7.66□□□□□ -1.18
USP3-215ENST00000559771 RNF123Q5XPI4 1314 aa7.66□□□□□ -1.18
USP3-215ENST00000559771 DXOO77932 396 aaKnown RBP7.65□□□□□ -1.18
USP3-215ENST00000559771 EPHX2P34913 555 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 SCNN1DP51172 638 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 PLCB2Q00722 1185 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 FMR1Q06787 632 aaKnown RBP eCLIP7.65□□□□□ -1.18
USP3-215ENST00000559771 KRT24Q2M2I5 525 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 SLC10A5Q5PT55 438 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 MAP1SQ66K74 1059 aaPredicted RBP7.65□□□□□ -1.18
USP3-215ENST00000559771 DDX60Q8IY21 1712 aaKnown RBP7.65□□□□□ -1.18
USP3-215ENST00000559771 TNS4Q8IZW8 715 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 GPC2Q8N158 579 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 SVOPQ8N4V2 548 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 CRAMP1Q96RY5 1269 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 NYXQ9GZU5 481 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 HACL1Q9UJ83 578 aa7.65□□□□□ -1.18
USP3-215ENST00000559771 LRRC37AA6NMS7 1700 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 THSD7BQ9C0I4 1608 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 DUOX1Q9NRD9 1551 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 FOXN1O15353 648 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 SLURP2P0DP57 97 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 GTF2E1P29083 439 aaPredicted RBP7.64□□□□□ -1.19
USP3-215ENST00000559771 TMPOP42166 694 aaKnown RBP7.64□□□□□ -1.19
USP3-215ENST00000559771 EPS15P42566 896 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 RIPK4P57078 832 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 E2F4Q16254 413 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 EAPPQ56P03 285 aaPredicted RBP7.64□□□□□ -1.19
USP3-215ENST00000559771 CC2D2BQ6DHV5 1058 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 KIF6Q6ZMV9 814 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 PXYLP1Q8TE99 480 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 TSPYL4Q9UJ04 414 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 WASF2Q9Y6W5 498 aa7.64□□□□□ -1.19
USP3-215ENST00000559771 ABCC4O15439 1325 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 MAPK8IP3Q9UPT6 1336 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 RASSF10A6NK89 507 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 TMEM88BA6NKF7 163 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 CHL1O00533 1208 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 TCERG1O14776 1098 aaKnown RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms