RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NOB1Q9ULX3 412 aaKnown RBP20.52■□□□□ 0.88
VPS29-207ENST00000549970 MROH5Q6ZUA9 1318 aa20.52■□□□□ 0.87
VPS29-207ENST00000549970 FAM155AB1AL88 458 aaPredicted RBP20.51■□□□□ 0.87
VPS29-207ENST00000549970 GYG1P46976 350 aa20.51■□□□□ 0.87
VPS29-207ENST00000549970 KLHDC4Q8TBB5 520 aa20.51■□□□□ 0.87
VPS29-207ENST00000549970 PAPPA2Q9BXP8 1791 aa20.5■□□□□ 0.87
VPS29-207ENST00000549970 METTL24Q5JXM2 366 aa20.5■□□□□ 0.87
VPS29-207ENST00000549970 CCDC102AQ96A19 550 aa20.5■□□□□ 0.87
VPS29-207ENST00000549970 ZBED3Q96IU2 234 aaPredicted RBP20.5■□□□□ 0.87
VPS29-207ENST00000549970 HIBADHP31937 336 aaKnown RBP20.49■□□□□ 0.87
VPS29-207ENST00000549970 FKBP1AP62942 108 aaKnown RBP20.49■□□□□ 0.87
VPS29-207ENST00000549970 DLGAP5Q15398 846 aa20.49■□□□□ 0.87
VPS29-207ENST00000549970 MOB2Q70IA6 237 aa20.49■□□□□ 0.87
VPS29-207ENST00000549970 APOBEC3FQ8IUX4 373 aaKnown RBP20.49■□□□□ 0.87
VPS29-207ENST00000549970 FAM84BQ96KN1 310 aaPredicted RBP20.49■□□□□ 0.87
VPS29-207ENST00000549970 PCDHAC2Q9Y5I4 1007 aa20.49■□□□□ 0.87
VPS29-207ENST00000549970 CA12O43570 354 aa20.48■□□□□ 0.87
VPS29-207ENST00000549970 FKBP1BP68106 108 aa20.48■□□□□ 0.87
VPS29-207ENST00000549970 TDRD7Q8NHU6 1098 aaKnown RBP20.48■□□□□ 0.87
VPS29-207ENST00000549970 API5Q9BZZ5 524 aaKnown RBP20.48■□□□□ 0.87
VPS29-207ENST00000549970 SLC10A3P09131 477 aa20.47■□□□□ 0.87
VPS29-207ENST00000549970 NF2P35240 595 aa20.47■□□□□ 0.87
VPS29-207ENST00000549970 RARSP54136 660 aaKnown RBP20.47■□□□□ 0.87
VPS29-207ENST00000549970 KIF23Q02241 960 aaPredicted RBP20.47■□□□□ 0.87
VPS29-207ENST00000549970 TTLL12Q14166 644 aaPredicted RBP20.47■□□□□ 0.87
VPS29-207ENST00000549970 CFAP100Q494V2 611 aa20.47■□□□□ 0.87
VPS29-207ENST00000549970 VPS37DQ86XT2 251 aa20.47■□□□□ 0.87
VPS29-207ENST00000549970 FAM205AQ6ZU69 1335 aa20.47■□□□□ 0.87
VPS29-207ENST00000549970 PDE8BO95263 885 aa20.46■□□□□ 0.87
VPS29-207ENST00000549970 UBTFL1P0CB47 393 aaPredicted RBP20.46■□□□□ 0.87
VPS29-207ENST00000549970 MFSD14BQ5SR56 506 aa20.46■□□□□ 0.87
VPS29-207ENST00000549970 RASAL3Q86YV0 1011 aa20.46■□□□□ 0.87
VPS29-207ENST00000549970 MTMR14Q8NCE2 650 aa20.46■□□□□ 0.87
VPS29-207ENST00000549970 UBE2Q2LH0YL09 131 aa20.45■□□□□ 0.86
VPS29-207ENST00000549970 RBM5P52756 815 aaKnown RBP eCLIP20.45■□□□□ 0.86
VPS29-207ENST00000549970 VGLL2Q8N8G2 317 aa20.45■□□□□ 0.86
VPS29-207ENST00000549970 IQSEC3Q9UPP2 1182 aaPredicted RBP20.45■□□□□ 0.86
VPS29-207ENST00000549970 ECM29Q5VYK3 1845 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 CLRN2A0PK11 232 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 SPDYE2BA6NHP3 402 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 MYO1BO43795 1136 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 SPDYE6P0CI01 402 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 RFX5P48382 616 aaPredicted RBP20.44■□□□□ 0.86
VPS29-207ENST00000549970 FBXO33Q7Z6M2 555 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 MIER1Q8N108 512 aa20.44■□□□□ 0.86
VPS29-207ENST00000549970 PTPN12Q05209 780 aaKnown RBP20.43■□□□□ 0.86
VPS29-207ENST00000549970 CHAF1AQ13111 956 aaPredicted RBP20.43■□□□□ 0.86
VPS29-207ENST00000549970 PRKG1Q13976 671 aa20.43■□□□□ 0.86
VPS29-207ENST00000549970 CAVIN4Q5BKX8 364 aa20.43■□□□□ 0.86
VPS29-207ENST00000549970 DIEXFQ68CQ4 756 aaKnown RBP20.43■□□□□ 0.86
VPS29-207ENST00000549970 PRMT6Q96LA8 375 aaPredicted RBP20.43■□□□□ 0.86
VPS29-207ENST00000549970 DEFB129Q9H1M3 183 aa20.43■□□□□ 0.86
VPS29-207ENST00000549970 VEZTQ9HBM0 779 aa20.43■□□□□ 0.86
VPS29-207ENST00000549970 TTF2Q9UNY4 1162 aaKnown RBP20.43■□□□□ 0.86
VPS29-207ENST00000549970 AOX1Q06278 1338 aa20.43■□□□□ 0.86
VPS29-207ENST00000549970 KIF16BQ96L93 1317 aa20.43■□□□□ 0.86
VPS29-207ENST00000549970 ARAP2Q8WZ64 1704 aa20.42■□□□□ 0.86
VPS29-207ENST00000549970 EYA2O00167 538 aa20.42■□□□□ 0.86
VPS29-207ENST00000549970 FRAT2O75474 233 aaPredicted RBP20.42■□□□□ 0.86
VPS29-207ENST00000549970 PUM3Q15397 648 aaKnown RBP20.42■□□□□ 0.86
VPS29-207ENST00000549970 LRRFIP2Q9Y608 721 aaKnown RBP20.42■□□□□ 0.86
VPS29-207ENST00000549970 CASP8AP2Q9UKL3 1982 aa20.42■□□□□ 0.86
VPS29-207ENST00000549970 COL1A1P02452 1464 aaPredicted RBP20.42■□□□□ 0.86
VPS29-207ENST00000549970 BCAMP50895 628 aa20.41■□□□□ 0.86
VPS29-207ENST00000549970 CSRNP1Q96S65 589 aa20.41■□□□□ 0.86
VPS29-207ENST00000549970 MEIS3Q99687 375 aa20.41■□□□□ 0.86
VPS29-207ENST00000549970 SIL1Q9H173 461 aa20.41■□□□□ 0.86
VPS29-207ENST00000549970 AKAP11Q9UKA4 1901 aa20.41■□□□□ 0.86
VPS29-207ENST00000549970 IFIT1P09914 478 aaKnown RBP20.4■□□□□ 0.86
VPS29-207ENST00000549970 ARMC9Q7Z3E5 817 aa20.4■□□□□ 0.86
VPS29-207ENST00000549970 FZD1Q9UP38 647 aa20.4■□□□□ 0.86
VPS29-207ENST00000549970 FGFR2P21802 821 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 HNRNPUQ00839 825 aaKnown RBP eCLIP20.39■□□□□ 0.85
VPS29-207ENST00000549970 GRIK5Q16478 980 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 ATG9AQ7Z3C6 839 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 ARHGAP45Q92619 1136 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 RNF186Q9NXI6 227 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 SERPINA10Q9UK55 444 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 ANGEL1Q9UNK9 670 aaKnown RBP20.39■□□□□ 0.85
VPS29-207ENST00000549970 HDAC5Q9UQL6 1122 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 PPP2R3BQ9Y5P8 575 aa20.39■□□□□ 0.85
VPS29-207ENST00000549970 TRPA1O75762 1119 aa20.38■□□□□ 0.85
VPS29-207ENST00000549970 SLC5A1P13866 664 aa20.38■□□□□ 0.85
VPS29-207ENST00000549970 MKRN3Q13064 507 aaKnown RBP20.38■□□□□ 0.85
VPS29-207ENST00000549970 SAGE1Q9NXZ1 904 aa20.38■□□□□ 0.85
VPS29-207ENST00000549970 BCAR3O75815 825 aa20.37■□□□□ 0.85
VPS29-207ENST00000549970 CRKP46108 304 aa20.37■□□□□ 0.85
VPS29-207ENST00000549970 INTS3Q68E01 1043 aaKnown RBP20.37■□□□□ 0.85
VPS29-207ENST00000549970 TBC1D22AQ8WUA7 517 aa20.37■□□□□ 0.85
VPS29-207ENST00000549970 LPIN2Q92539 896 aa20.37■□□□□ 0.85
VPS29-207ENST00000549970 FRAT1Q92837 279 aaPredicted RBP20.37■□□□□ 0.85
VPS29-207ENST00000549970 ABHD8Q96I13 439 aa20.37■□□□□ 0.85
VPS29-207ENST00000549970 TDRD3Q9H7E2 651 aaKnown RBP20.37■□□□□ 0.85
VPS29-207ENST00000549970 PA2G4Q9UQ80 394 aaKnown RBP20.37■□□□□ 0.85
VPS29-207ENST00000549970 SSC5DA1L4H1 1573 aa20.37■□□□□ 0.85
VPS29-207ENST00000549970 TRIM27P14373 513 aa20.36■□□□□ 0.85
VPS29-207ENST00000549970 RASA3Q14644 834 aa20.36■□□□□ 0.85
VPS29-207ENST00000549970 SPDYE2Q495Y8 402 aa20.36■□□□□ 0.85
VPS29-207ENST00000549970 REM2Q8IYK8 340 aaPredicted RBP20.36■□□□□ 0.85
VPS29-207ENST00000549970 DZIP1LQ8IYY4 767 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms