RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 HSPA1AP0DMV8 641 aaKnown RBP25.7■■□□□ 1.7
VPS28-206ENST00000526734 HSPA1BP0DMV9 641 aaKnown RBP25.7■■□□□ 1.7
VPS28-206ENST00000526734 MTX1Q13505 466 aa25.7■■□□□ 1.7
VPS28-206ENST00000526734 FBXO33Q7Z6M2 555 aa25.7■■□□□ 1.7
VPS28-206ENST00000526734 ASTN2O75129 1339 aaPredicted RBP25.69■■□□□ 1.7
VPS28-206ENST00000526734 CERS5Q8N5B7 392 aa25.69■■□□□ 1.7
VPS28-206ENST00000526734 C2orf69Q8N8R5 385 aa25.69■■□□□ 1.7
VPS28-206ENST00000526734 MTMR14Q8NCE2 650 aa25.69■■□□□ 1.7
VPS28-206ENST00000526734 CAPNS2Q96L46 248 aa25.69■■□□□ 1.7
VPS28-206ENST00000526734 COPRSQ9NQ92 184 aa25.69■■□□□ 1.7
VPS28-206ENST00000526734 SLC5A1P13866 664 aa25.68■■□□□ 1.7
VPS28-206ENST00000526734 FGFR2P21802 821 aa25.68■■□□□ 1.7
VPS28-206ENST00000526734 NBPF9Q3BBW0 867 aa25.68■■□□□ 1.7
VPS28-206ENST00000526734 PAXIP1Q6ZW49 1069 aaPredicted RBP25.68■■□□□ 1.7
VPS28-206ENST00000526734 LPIN2Q92539 896 aa25.68■■□□□ 1.7
VPS28-206ENST00000526734 CDCA5Q96FF9 252 aa25.68■■□□□ 1.7
VPS28-206ENST00000526734 GBA2Q9HCG7 927 aaPredicted RBP25.68■■□□□ 1.7
VPS28-206ENST00000526734 GNAI2P04899 355 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 IL15P40933 162 aaPredicted RBP25.67■■□□□ 1.7
VPS28-206ENST00000526734 FKBP1BP68106 108 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 DLGAP5Q15398 846 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 ATG9AQ7Z3C6 839 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 APOBEC3FQ8IUX4 373 aaKnown RBP25.67■■□□□ 1.7
VPS28-206ENST00000526734 TBC1D22AQ8WUA7 517 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 CLUAP1Q96AJ1 413 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 ZBED3Q96IU2 234 aaPredicted RBP25.67■■□□□ 1.7
VPS28-206ENST00000526734 CEP126Q9P2H0 1117 aa25.67■■□□□ 1.7
VPS28-206ENST00000526734 THSD7BQ9C0I4 1608 aa25.66■■□□□ 1.7
VPS28-206ENST00000526734 MAP2K1Q02750 393 aaPredicted RBP25.66■■□□□ 1.7
VPS28-206ENST00000526734 MFSD14BQ5SR56 506 aa25.66■■□□□ 1.7
VPS28-206ENST00000526734 FTSJ3Q8IY81 847 aaKnown RBP25.66■■□□□ 1.7
VPS28-206ENST00000526734 FRAT2O75474 233 aaPredicted RBP25.65■■□□□ 1.7
VPS28-206ENST00000526734 AIDAQ96BJ3 306 aa25.65■■□□□ 1.7
VPS28-206ENST00000526734 COL1A1P02452 1464 aaPredicted RBP25.65■■□□□ 1.7
VPS28-206ENST00000526734 MYO1BO43795 1136 aa25.64■■□□□ 1.7
VPS28-206ENST00000526734 MAP2K2P36507 400 aa25.64■■□□□ 1.7
VPS28-206ENST00000526734 HUNKP57058 714 aa25.64■■□□□ 1.7
VPS28-206ENST00000526734 CYP4F22Q6NT55 531 aa25.64■■□□□ 1.7
VPS28-206ENST00000526734 DZIP1LQ8IYY4 767 aaKnown RBP25.64■■□□□ 1.7
VPS28-206ENST00000526734 TMEM57Q8N5G2 664 aa25.64■■□□□ 1.7
VPS28-206ENST00000526734 SIL1Q9H173 461 aa25.64■■□□□ 1.7
VPS28-206ENST00000526734 SRGAP3O43295 1099 aa25.63■■□□□ 1.69
VPS28-206ENST00000526734 TNNQ9UQP3 1299 aa25.63■■□□□ 1.69
VPS28-206ENST00000526734 ATP2B3Q16720 1220 aa25.62■■□□□ 1.69
VPS28-206ENST00000526734 WBP1LQ9NX94 342 aa25.62■■□□□ 1.69
VPS28-206ENST00000526734 SERPINA10Q9UK55 444 aa25.62■■□□□ 1.69
VPS28-206ENST00000526734 ARAP2Q8WZ64 1704 aa25.62■■□□□ 1.69
VPS28-206ENST00000526734 SPDYE2BA6NHP3 402 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 F8W031 263 aaPredicted RBP25.61■■□□□ 1.69
VPS28-206ENST00000526734 SPDYE6P0CI01 402 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 NF2P35240 595 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 CFAP100Q494V2 611 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 DLK2Q6UY11 383 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 JAG2Q9Y219 1238 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 SUGT1Q9Y2Z0 365 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 PPP2R3BQ9Y5P8 575 aa25.61■■□□□ 1.69
VPS28-206ENST00000526734 POLR2AP24928 1970 aaKnown RBP25.61■■□□□ 1.69
VPS28-206ENST00000526734 PAPPA2Q9BXP8 1791 aa25.6■■□□□ 1.69
VPS28-206ENST00000526734 ZBTB22O15209 634 aa25.6■■□□□ 1.69
VPS28-206ENST00000526734 MS4A1P11836 297 aa25.6■■□□□ 1.69
VPS28-206ENST00000526734 BCAMP50895 628 aa25.6■■□□□ 1.69
VPS28-206ENST00000526734 NOGQ13253 232 aa25.6■■□□□ 1.69
VPS28-206ENST00000526734 TTF2Q9UNY4 1162 aaKnown RBP25.6■■□□□ 1.69
VPS28-206ENST00000526734 PA2G4Q9UQ80 394 aaKnown RBP25.6■■□□□ 1.69
VPS28-206ENST00000526734 HDLBPQ00341 1268 aaKnown RBP25.59■■□□□ 1.69
VPS28-206ENST00000526734 GRM1Q13255 1194 aa25.59■■□□□ 1.69
VPS28-206ENST00000526734 RGMBQ6NW40 437 aa25.59■■□□□ 1.69
VPS28-206ENST00000526734 CCDC102AQ96A19 550 aa25.59■■□□□ 1.69
VPS28-206ENST00000526734 GNL3LQ9NVN8 582 aaKnown RBP25.59■■□□□ 1.69
VPS28-206ENST00000526734 MAST3O60307 1309 aa25.59■■□□□ 1.69
VPS28-206ENST00000526734 CHAF1AQ13111 956 aaPredicted RBP25.58■■□□□ 1.69
VPS28-206ENST00000526734 IQSEC3Q9UPP2 1182 aaPredicted RBP25.58■■□□□ 1.69
VPS28-206ENST00000526734 AKAP2Q9Y2D5 859 aa25.58■■□□□ 1.69
VPS28-206ENST00000526734 SEMA3EO15041 775 aa25.57■■□□□ 1.68
VPS28-206ENST00000526734 CTCFP49711 727 aaPredicted RBP25.57■■□□□ 1.68
VPS28-206ENST00000526734 RBM5P52756 815 aaKnown RBP eCLIP25.57■■□□□ 1.68
VPS28-206ENST00000526734 ITPRIPQ8IWB1 547 aa25.57■■□□□ 1.68
VPS28-206ENST00000526734 WDR66Q8TBY9 1149 aa25.57■■□□□ 1.68
VPS28-206ENST00000526734 BEGAINQ9BUH8 593 aa25.57■■□□□ 1.68
VPS28-206ENST00000526734 MRIQ9BWK5 157 aa25.56■■□□□ 1.68
VPS28-206ENST00000526734 FOXN1O15353 648 aa25.55■■□□□ 1.68
VPS28-206ENST00000526734 TNFAIP1Q13829 316 aa25.55■■□□□ 1.68
VPS28-206ENST00000526734 ECM29Q5VYK3 1845 aa25.54■■□□□ 1.68
VPS28-206ENST00000526734 CA12O43570 354 aa25.54■■□□□ 1.68
VPS28-206ENST00000526734 ZNF157P51786 506 aaPredicted RBP25.54■■□□□ 1.68
VPS28-206ENST00000526734 PRMT6Q96LA8 375 aaPredicted RBP25.54■■□□□ 1.68
VPS28-206ENST00000526734 DEFB129Q9H1M3 183 aa25.54■■□□□ 1.68
VPS28-206ENST00000526734 AOC2O75106 756 aa25.53■■□□□ 1.68
VPS28-206ENST00000526734 CRKP46108 304 aa25.53■■□□□ 1.68
VPS28-206ENST00000526734 TEKT1Q969V4 418 aa25.53■■□□□ 1.68
VPS28-206ENST00000526734 PRDM10Q9NQV6 1147 aa25.53■■□□□ 1.68
VPS28-206ENST00000526734 PNMA6EA0A0J9YXQ4 647 aa25.52■■□□□ 1.68
VPS28-206ENST00000526734 ZBTB7BO15156 539 aaPredicted RBP25.52■■□□□ 1.68
VPS28-206ENST00000526734 SLC10A3P09131 477 aa25.52■■□□□ 1.68
VPS28-206ENST00000526734 RLBP1P12271 317 aa25.52■■□□□ 1.68
VPS28-206ENST00000526734 G3BP1Q13283 466 aaKnown RBP eCLIP25.52■■□□□ 1.68
VPS28-206ENST00000526734 SPDYE2Q495Y8 402 aa25.52■■□□□ 1.68
VPS28-206ENST00000526734 DENND2AQ9ULE3 1009 aa25.52■■□□□ 1.68
VPS28-206ENST00000526734 SCAF8Q9UPN6 1271 aaKnown RBP25.52■■□□□ 1.68
VPS28-206ENST00000526734 POLA2Q14181 598 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms