RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 F8W031 263 aaPredicted RBP26.06■■□□□ 1.76
VPS28-203ENST00000524521 FBXO33Q7Z6M2 555 aa26.06■■□□□ 1.76
VPS28-203ENST00000524521 WNT10BO00744 389 aa26.05■■□□□ 1.76
VPS28-203ENST00000524521 IFIT1P09914 478 aaKnown RBP26.05■■□□□ 1.76
VPS28-203ENST00000524521 FKBP1AP62942 108 aaKnown RBP26.05■■□□□ 1.76
VPS28-203ENST00000524521 PUM3Q15397 648 aaKnown RBP26.05■■□□□ 1.76
VPS28-203ENST00000524521 SAPCD2Q86UD0 394 aa26.05■■□□□ 1.76
VPS28-203ENST00000524521 FBXO3Q9UK99 471 aa26.05■■□□□ 1.76
VPS28-203ENST00000524521 IQSEC3Q9UPP2 1182 aaPredicted RBP26.05■■□□□ 1.76
VPS28-203ENST00000524521 PA2G4Q9UQ80 394 aaKnown RBP26.05■■□□□ 1.76
VPS28-203ENST00000524521 FAM205AQ6ZU69 1335 aa26.05■■□□□ 1.76
VPS28-203ENST00000524521 CIAO1O76071 339 aa26.04■■□□□ 1.76
VPS28-203ENST00000524521 GNAI2P04899 355 aa26.04■■□□□ 1.76
VPS28-203ENST00000524521 GRM1Q13255 1194 aa26.04■■□□□ 1.76
VPS28-203ENST00000524521 FTSJ3Q8IY81 847 aaKnown RBP26.04■■□□□ 1.76
VPS28-203ENST00000524521 CEP126Q9P2H0 1117 aa26.04■■□□□ 1.76
VPS28-203ENST00000524521 WDR33Q9C0J8 1336 aaKnown RBP26.04■■□□□ 1.76
VPS28-203ENST00000524521 SRGAP3O43295 1099 aa26.03■■□□□ 1.76
VPS28-203ENST00000524521 FRAT2O75474 233 aaPredicted RBP26.03■■□□□ 1.76
VPS28-203ENST00000524521 FGFR2P21802 821 aa26.03■■□□□ 1.76
VPS28-203ENST00000524521 BCAMP50895 628 aa26.03■■□□□ 1.76
VPS28-203ENST00000524521 CYP4F22Q6NT55 531 aa26.03■■□□□ 1.76
VPS28-203ENST00000524521 SCAF8Q9UPN6 1271 aaKnown RBP26.03■■□□□ 1.76
VPS28-203ENST00000524521 PITPNM2Q9BZ72 1349 aa26.03■■□□□ 1.76
VPS28-203ENST00000524521 HSPA1AP0DMV8 641 aaKnown RBP26.02■■□□□ 1.76
VPS28-203ENST00000524521 HSPA1BP0DMV9 641 aaKnown RBP26.02■■□□□ 1.76
VPS28-203ENST00000524521 SLC5A1P13866 664 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 DLGAP5Q15398 846 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 MFSD14BQ5SR56 506 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 DZIP1LQ8IYY4 767 aaKnown RBP26.02■■□□□ 1.76
VPS28-203ENST00000524521 LPIN2Q92539 896 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 CDCA5Q96FF9 252 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 CAPNS2Q96L46 248 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 COPRSQ9NQ92 184 aa26.02■■□□□ 1.76
VPS28-203ENST00000524521 IL15P40933 162 aaPredicted RBP26.01■■□□□ 1.75
VPS28-203ENST00000524521 ECE1P42892 770 aa26.01■■□□□ 1.75
VPS28-203ENST00000524521 C2orf69Q8N8R5 385 aa26.01■■□□□ 1.75
VPS28-203ENST00000524521 GBA2Q9HCG7 927 aaPredicted RBP26.01■■□□□ 1.75
VPS28-203ENST00000524521 CHAF1AQ13111 956 aaPredicted RBP26■■□□□ 1.75
VPS28-203ENST00000524521 MTX1Q13505 466 aa26■■□□□ 1.75
VPS28-203ENST00000524521 ZBED3Q96IU2 234 aaPredicted RBP26■■□□□ 1.75
VPS28-203ENST00000524521 HUNKP57058 714 aa25.99■■□□□ 1.75
VPS28-203ENST00000524521 CFAP100Q494V2 611 aa25.99■■□□□ 1.75
VPS28-203ENST00000524521 RLBP1P12271 317 aa25.98■■□□□ 1.75
VPS28-203ENST00000524521 RBM5P52756 815 aaKnown RBP eCLIP25.98■■□□□ 1.75
VPS28-203ENST00000524521 ATP2B3Q16720 1220 aa25.98■■□□□ 1.75
VPS28-203ENST00000524521 ITPRIPQ8IWB1 547 aa25.98■■□□□ 1.75
VPS28-203ENST00000524521 HHIPL1Q96JK4 782 aa25.98■■□□□ 1.75
VPS28-203ENST00000524521 PCDHAC2Q9Y5I4 1007 aa25.98■■□□□ 1.75
VPS28-203ENST00000524521 PRAMEF18Q5VWM3 479 aa25.97■■□□□ 1.75
VPS28-203ENST00000524521 MTMR14Q8NCE2 650 aa25.97■■□□□ 1.75
VPS28-203ENST00000524521 TTF2Q9UNY4 1162 aaKnown RBP25.97■■□□□ 1.75
VPS28-203ENST00000524521 PNMA6EA0A0J9YXQ4 647 aa25.95■■□□□ 1.74
VPS28-203ENST00000524521 APOBEC3FQ8IUX4 373 aaKnown RBP25.95■■□□□ 1.74
VPS28-203ENST00000524521 TBC1D22AQ8WUA7 517 aa25.95■■□□□ 1.74
VPS28-203ENST00000524521 PRMT6Q96LA8 375 aaPredicted RBP25.95■■□□□ 1.74
VPS28-203ENST00000524521 MYO1BO43795 1136 aa25.94■■□□□ 1.74
VPS28-203ENST00000524521 AOC2O75106 756 aa25.94■■□□□ 1.74
VPS28-203ENST00000524521 SPDYE2BA6NHP3 402 aa25.93■■□□□ 1.74
VPS28-203ENST00000524521 SPDYE6P0CI01 402 aa25.93■■□□□ 1.74
VPS28-203ENST00000524521 GRIK5Q16478 980 aa25.93■■□□□ 1.74
VPS28-203ENST00000524521 PANK1Q8TE04 598 aa25.93■■□□□ 1.74
VPS28-203ENST00000524521 AIDAQ96BJ3 306 aa25.93■■□□□ 1.74
VPS28-203ENST00000524521 CLRN2A0PK11 232 aa25.92■■□□□ 1.74
VPS28-203ENST00000524521 ZBTB7BO15156 539 aaPredicted RBP25.92■■□□□ 1.74
VPS28-203ENST00000524521 MAP2K1Q02750 393 aaPredicted RBP25.92■■□□□ 1.74
VPS28-203ENST00000524521 TFCP2Q12800 502 aa25.92■■□□□ 1.74
VPS28-203ENST00000524521 RGMBQ6NW40 437 aa25.92■■□□□ 1.74
VPS28-203ENST00000524521 C1orf115Q9H7X2 142 aa25.92■■□□□ 1.74
VPS28-203ENST00000524521 WBP1LQ9NX94 342 aa25.92■■□□□ 1.74
VPS28-203ENST00000524521 SERPINA10Q9UK55 444 aa25.92■■□□□ 1.74
VPS28-203ENST00000524521 MAP2K2P36507 400 aa25.91■■□□□ 1.74
VPS28-203ENST00000524521 TIMM10P62072 90 aa25.91■■□□□ 1.74
VPS28-203ENST00000524521 G3BP1Q13283 466 aaKnown RBP eCLIP25.91■■□□□ 1.74
VPS28-203ENST00000524521 GNL3LQ9NVN8 582 aaKnown RBP25.91■■□□□ 1.74
VPS28-203ENST00000524521 FOXN1O15353 648 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 MS4A1P11836 297 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 NF2P35240 595 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 ATP8B2P98198 1209 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 VEZTQ9HBM0 779 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 RCAN3Q9UKA8 241 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 AKAP2Q9Y2D5 859 aa25.9■■□□□ 1.74
VPS28-203ENST00000524521 ADORA1P30542 326 aa25.89■■□□□ 1.74
VPS28-203ENST00000524521 CRKP46108 304 aa25.89■■□□□ 1.74
VPS28-203ENST00000524521 ZNF157P51786 506 aaPredicted RBP25.89■■□□□ 1.74
VPS28-203ENST00000524521 FKBP1BP68106 108 aa25.89■■□□□ 1.74
VPS28-203ENST00000524521 TTLL12Q14166 644 aaPredicted RBP25.89■■□□□ 1.74
VPS28-203ENST00000524521 WDR66Q8TBY9 1149 aa25.89■■□□□ 1.74
VPS28-203ENST00000524521 DEFB129Q9H1M3 183 aa25.89■■□□□ 1.74
VPS28-203ENST00000524521 AOX1Q06278 1338 aa25.88■■□□□ 1.73
VPS28-203ENST00000524521 PHKA1P46020 1223 aa25.88■■□□□ 1.73
VPS28-203ENST00000524521 MOB2Q70IA6 237 aa25.88■■□□□ 1.73
VPS28-203ENST00000524521 TDRD3Q9H7E2 651 aaKnown RBP25.88■■□□□ 1.73
VPS28-203ENST00000524521 A0A1B0GUL7 405 aa25.87■■□□□ 1.73
VPS28-203ENST00000524521 POLA2Q14181 598 aa25.87■■□□□ 1.73
VPS28-203ENST00000524521 CCDC102AQ96A19 550 aa25.87■■□□□ 1.73
VPS28-203ENST00000524521 NEUROD6Q96NK8 337 aa25.87■■□□□ 1.73
VPS28-203ENST00000524521 PCNTO95613 3336 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 UBE2Q2LH0YL09 131 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 HDLBPQ00341 1268 aaKnown RBP25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms