RNA–Protein interactions for RNA: ENST00000511944.5

NR1I3-230, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-230ENST00000511944 SLC10A3P09131 477 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 TTLL12Q14166 644 aaPredicted RBP11.14□□□□□ -0.63
NR1I3-230ENST00000511944 CCDC152Q4G0S7 254 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 SUSD4Q5VX71 490 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 LRCH3Q96II8 777 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 SETDB2Q96T68 719 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 GPCPD1Q9NPB8 672 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.14□□□□□ -0.63
NR1I3-230ENST00000511944 ABCC12Q96J65 1359 aa11.14□□□□□ -0.63
NR1I3-230ENST00000511944 QSER1Q2KHR3 1735 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 ANKRD18BA2A2Z9 1011 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 GLRX3O76003 335 aaKnown RBP11.13□□□□□ -0.63
NR1I3-230ENST00000511944 SASH1O94885 1247 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 CLCN1P35523 988 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 SF3B3Q15393 1217 aaKnown RBP11.13□□□□□ -0.63
NR1I3-230ENST00000511944 USPL1Q5W0Q7 1092 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 TPTE2Q6XPS3 522 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 SKAP1Q86WV1 359 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 CCDC125Q86Z20 511 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 FAM217BQ9NTX9 383 aaPredicted RBP11.13□□□□□ -0.63
NR1I3-230ENST00000511944 AKAP2Q9Y2D5 859 aa11.13□□□□□ -0.63
NR1I3-230ENST00000511944 DDX60Q8IY21 1712 aaKnown RBP11.12□□□□□ -0.63
NR1I3-230ENST00000511944 CDC45O75419 566 aa11.12□□□□□ -0.63
NR1I3-230ENST00000511944 IFIT2P09913 472 aaKnown RBP11.12□□□□□ -0.63
NR1I3-230ENST00000511944 CASC1Q6TDU7 716 aa11.12□□□□□ -0.63
NR1I3-230ENST00000511944 RNF166Q96A37 237 aaPredicted RBP11.12□□□□□ -0.63
NR1I3-230ENST00000511944 UPF2Q9HAU5 1272 aaKnown RBP11.12□□□□□ -0.63
NR1I3-230ENST00000511944 PA2G4Q9UQ80 394 aaKnown RBP11.12□□□□□ -0.63
NR1I3-230ENST00000511944 ZNF609O15014 1411 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 DDX11L8A8MPP1 907 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 APBB1O00213 710 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 EPB41L2O43491 1005 aaKnown RBP11.11□□□□□ -0.63
NR1I3-230ENST00000511944 SMARCA5O60264 1052 aaPredicted RBP11.11□□□□□ -0.63
NR1I3-230ENST00000511944 GSPT1P15170 499 aaKnown RBP11.11□□□□□ -0.63
NR1I3-230ENST00000511944 ITGA6P23229 1130 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 KCNQ4P56696 695 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 TNNI3KQ59H18 835 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 TBC1D9BQ66K14 1250 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 ATG9AQ7Z3C6 839 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 CDC5LQ99459 802 aaKnown RBP11.11□□□□□ -0.63
NR1I3-230ENST00000511944 ECHDC1Q9NTX5 307 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 HPS5Q9UPZ3 1129 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 CHMP3Q9Y3E7 222 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 RBM19Q9Y4C8 960 aaKnown RBP11.11□□□□□ -0.63
NR1I3-230ENST00000511944 FPGT-TNNI3KV9GXZ4 949 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 RFX7Q2KHR2 1363 aa11.11□□□□□ -0.63
NR1I3-230ENST00000511944 MROH5Q6ZUA9 1318 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 TUBGCP6Q96RT7 1819 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 RNF40O75150 1001 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 GYS1P13807 737 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 TAF7LQ5H9L4 462 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 NBPF5PQ86XG9 351 aaPredicted RBP11.1□□□□□ -0.63
NR1I3-230ENST00000511944 C16orf71Q8IYS4 520 aaPredicted RBP11.1□□□□□ -0.63
NR1I3-230ENST00000511944 NLGN1Q8N2Q7 840 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 PI4K2BQ8TCG2 481 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 CAMKK2Q96RR4 588 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 IL1RAPL2Q9NP60 686 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 WBP1LQ9NX94 342 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 CEP126Q9P2H0 1117 aa11.1□□□□□ -0.63
NR1I3-230ENST00000511944 TM4SF1P30408 202 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 SSTR3P32745 418 aaPredicted RBP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 BAG6P46379 1132 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 SF3B2Q13435 895 aaKnown RBP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 RTL5Q5HYW3 569 aaPredicted RBP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 AACSQ86V21 672 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 IL27Q8NEV9 243 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 OTUD7AQ8TE49 926 aaPredicted RBP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 JARID2Q92833 1246 aaPredicted RBP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 SIL1Q9H173 461 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 GREM2Q9H772 168 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 SRP68Q9UHB9 627 aaKnown RBP11.09□□□□□ -0.63
NR1I3-230ENST00000511944 RIPOR2Q9Y4F9 1068 aa11.09□□□□□ -0.63
NR1I3-230ENST00000511944 SPEF2Q9C093 1822 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 ATP5JP18859 108 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 SDSP20132 328 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 GTF2E1P29083 439 aaPredicted RBP11.08□□□□□ -0.64
NR1I3-230ENST00000511944 PTPN5P54829 565 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 TFCP2Q12800 502 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 LDHAL6AQ6ZMR3 332 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 AMIGO3Q86WK7 504 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 SLF2Q8IX21 1173 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 CNTROBQ8N137 903 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 EAF2Q96CJ1 260 aaPredicted RBP11.08□□□□□ -0.64
NR1I3-230ENST00000511944 ZNF512BQ96KM6 892 aaPredicted RBP11.08□□□□□ -0.64
NR1I3-230ENST00000511944 NLRP3Q96P20 1036 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 KDM4CQ9H3R0 1056 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 TFCP2L1Q9NZI6 479 aa11.08□□□□□ -0.64
NR1I3-230ENST00000511944 NRXN2Q9P2S2 1712 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 HIP1O00291 1037 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 HCLS1P14317 486 aaPredicted RBP11.07□□□□□ -0.64
NR1I3-230ENST00000511944 CD46P15529 392 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 IGHMBP2P38935 993 aaKnown RBP11.07□□□□□ -0.64
NR1I3-230ENST00000511944 NFIXQ14938 502 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 ERFEQ4G0M1 354 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 TBC1D9Q6ZT07 1266 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 SYNE4Q8N205 404 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 CNBD1Q8NA66 436 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 KLHDC4Q8TBB5 520 aa11.07□□□□□ -0.64
NR1I3-230ENST00000511944 TSR3Q9UJK0 312 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms