RNA–Protein interactions for RNA: ENST00000511944.5

NR1I3-230, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-230ENST00000511944 AEBP2Q6ZN18 517 aaPredicted RBP26.68■■□□□ 1.86
NR1I3-230ENST00000511944 CHIC1Q5VXU3 224 aa25.99■■□□□ 1.75
NR1I3-230ENST00000511944 PHF23Q9BUL5 403 aaPredicted RBP22.97■■□□□ 1.27
NR1I3-230ENST00000511944 SENP3Q9H4L4 574 aaPredicted RBP22.44■■□□□ 1.18
NR1I3-230ENST00000511944 PLPPR3Q6T4P5 718 aa21.05■□□□□ 0.96
NR1I3-230ENST00000511944 FOXD1Q16676 465 aa20.94■□□□□ 0.94
NR1I3-230ENST00000511944 NISCHQ9Y2I1 1504 aa20.91■□□□□ 0.94
NR1I3-230ENST00000511944 PPP6R1Q9UPN7 881 aa20.27■□□□□ 0.84
NR1I3-230ENST00000511944 ADRA2BP18089 450 aa20.21■□□□□ 0.83
NR1I3-230ENST00000511944 PIAS4Q8N2W9 510 aaPredicted RBP19.69■□□□□ 0.74
NR1I3-230ENST00000511944 MSH5O43196 834 aa19.14■□□□□ 0.65
NR1I3-230ENST00000511944 PPP4R3CPQ6ZMV5 832 aa18.62■□□□□ 0.57
NR1I3-230ENST00000511944 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
NR1I3-230ENST00000511944 MAPK8IP2Q13387 824 aaPredicted RBP18.36■□□□□ 0.53
NR1I3-230ENST00000511944 KCNA4P22459 653 aa18.3■□□□□ 0.52
NR1I3-230ENST00000511944 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.52
NR1I3-230ENST00000511944 CNKSR2Q8WXI2 1034 aa18.03■□□□□ 0.48
NR1I3-230ENST00000511944 NCBP3Q53F19 620 aaKnown RBP18.02■□□□□ 0.48
NR1I3-230ENST00000511944 DMRT2Q9Y5R5 561 aa17.97■□□□□ 0.47
NR1I3-230ENST00000511944 NPM3O75607 178 aaKnown RBP17.91■□□□□ 0.46
NR1I3-230ENST00000511944 RNF216Q9NWF9 866 aaPredicted RBP17.67■□□□□ 0.42
NR1I3-230ENST00000511944 HOXD11P31277 338 aaPredicted RBP17.62■□□□□ 0.41
NR1I3-230ENST00000511944 ZCCHC6Q5VYS8 1495 aaKnown RBP17.58■□□□□ 0.41
NR1I3-230ENST00000511944 POTEDQ86YR6 584 aa17.47■□□□□ 0.39
NR1I3-230ENST00000511944 DCAF1Q9Y4B6 1507 aa17.46■□□□□ 0.39
NR1I3-230ENST00000511944 SLC4A1APQ9BWU0 796 aaKnown RBP17.36■□□□□ 0.37
NR1I3-230ENST00000511944 MYO15BQ96JP2 1530 aa17.34■□□□□ 0.37
NR1I3-230ENST00000511944 DNAJC5BQ9UF47 199 aa17.31■□□□□ 0.36
NR1I3-230ENST00000511944 ABCC9O60706 1549 aa17.21■□□□□ 0.35
NR1I3-230ENST00000511944 DCAF8L1A6NGE4 600 aa17.16■□□□□ 0.34
NR1I3-230ENST00000511944 NACADO15069 1562 aa17.14■□□□□ 0.33
NR1I3-230ENST00000511944 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
NR1I3-230ENST00000511944 DCAF8L2P0C7V8 631 aa16.97■□□□□ 0.31
NR1I3-230ENST00000511944 EHMT2Q96KQ7 1210 aa16.97■□□□□ 0.31
NR1I3-230ENST00000511944 SLC4A2P04920 1241 aa16.95■□□□□ 0.3
NR1I3-230ENST00000511944 ZBTB22O15209 634 aa16.91■□□□□ 0.3
NR1I3-230ENST00000511944 CSRNP3Q8WYN3 585 aa16.8■□□□□ 0.28
NR1I3-230ENST00000511944 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.75■□□□□ 0.27
NR1I3-230ENST00000511944 FOXD4L1Q9NU39 408 aa16.74■□□□□ 0.27
NR1I3-230ENST00000511944 SCRIBQ14160 1630 aa16.67■□□□□ 0.26
NR1I3-230ENST00000511944 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
NR1I3-230ENST00000511944 U3KPZ7 1027 aaPredicted RBP16.57■□□□□ 0.24
NR1I3-230ENST00000511944 RNF39Q9H2S5 420 aa16.51■□□□□ 0.23
NR1I3-230ENST00000511944 UNC13AQ9UPW8 1703 aa16.48■□□□□ 0.23
NR1I3-230ENST00000511944 MYCNP04198 464 aaPredicted RBP16.46■□□□□ 0.23
NR1I3-230ENST00000511944 BICRAQ9NZM4 1560 aa16.38■□□□□ 0.21
NR1I3-230ENST00000511944 C1QBPQ07021 282 aaKnown RBP16.23■□□□□ 0.19
NR1I3-230ENST00000511944 BAZ1AQ9NRL2 1556 aaPredicted RBP16.2■□□□□ 0.18
NR1I3-230ENST00000511944 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.18■□□□□ 0.18
NR1I3-230ENST00000511944 HNRNPUL2Q1KMD3 747 aaKnown RBP16.18■□□□□ 0.18
NR1I3-230ENST00000511944 SAMD1Q6SPF0 538 aaPredicted RBP16.18■□□□□ 0.18
NR1I3-230ENST00000511944 ATF5Q9Y2D1 282 aaPredicted RBP16.18■□□□□ 0.18
NR1I3-230ENST00000511944 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
NR1I3-230ENST00000511944 SPINK5Q9NQ38 1064 aaPredicted RBP16.13■□□□□ 0.17
NR1I3-230ENST00000511944 CECR2Q9BXF3 1484 aa16.12■□□□□ 0.17
NR1I3-230ENST00000511944 ATXN8OSP0DMR3 200 aa16.11■□□□□ 0.17
NR1I3-230ENST00000511944 PABPN1Q86U42 306 aaKnown RBP eCLIP16.11■□□□□ 0.17
NR1I3-230ENST00000511944 SMARCA4P51532 1647 aa16.08■□□□□ 0.17
NR1I3-230ENST00000511944 MROH2BQ7Z745 1585 aa16.06■□□□□ 0.16
NR1I3-230ENST00000511944 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
NR1I3-230ENST00000511944 PEG3Q9GZU2 1588 aa16.01■□□□□ 0.15
NR1I3-230ENST00000511944 CACNB1Q02641 598 aaPredicted RBP15.99■□□□□ 0.15
NR1I3-230ENST00000511944 CAPN15O75808 1086 aa15.96■□□□□ 0.15
NR1I3-230ENST00000511944 APLP2Q06481 763 aa15.96■□□□□ 0.15
NR1I3-230ENST00000511944 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
NR1I3-230ENST00000511944 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
NR1I3-230ENST00000511944 EIF4G1Q04637 1599 aaKnown RBP15.91■□□□□ 0.14
NR1I3-230ENST00000511944 WIZO95785 1651 aa15.88■□□□□ 0.13
NR1I3-230ENST00000511944 TOP2AP11388 1531 aaKnown RBP15.87■□□□□ 0.13
NR1I3-230ENST00000511944 ATAD2BQ9ULI0 1458 aa15.84■□□□□ 0.13
NR1I3-230ENST00000511944 ZNF219Q9P2Y4 722 aaPredicted RBP15.83■□□□□ 0.12
NR1I3-230ENST00000511944 HMGXB3Q12766 1538 aa15.8■□□□□ 0.12
NR1I3-230ENST00000511944 NCAPD3P42695 1498 aa15.79■□□□□ 0.12
NR1I3-230ENST00000511944 BAZ1BQ9UIG0 1483 aaKnown RBP15.74■□□□□ 0.11
NR1I3-230ENST00000511944 DSG3P32926 999 aa15.74■□□□□ 0.11
NR1I3-230ENST00000511944 ABCB7O75027 752 aa15.72■□□□□ 0.11
NR1I3-230ENST00000511944 POLA2Q14181 598 aa15.68■□□□□ 0.1
NR1I3-230ENST00000511944 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
NR1I3-230ENST00000511944 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
NR1I3-230ENST00000511944 MKRN4PQ13434 485 aaPredicted RBP15.46■□□□□ 0.07
NR1I3-230ENST00000511944 CFTRP13569 1480 aa15.39■□□□□ 0.05
NR1I3-230ENST00000511944 CADPSQ9ULU8 1353 aa15.32■□□□□ 0.04
NR1I3-230ENST00000511944 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
NR1I3-230ENST00000511944 FBLN2P98095 1184 aa15.28■□□□□ 0.04
NR1I3-230ENST00000511944 ZBTB12Q9Y330 459 aaPredicted RBP15.28■□□□□ 0.04
NR1I3-230ENST00000511944 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
NR1I3-230ENST00000511944 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
NR1I3-230ENST00000511944 TRIM41Q8WV44 630 aa15.18■□□□□ 0.02
NR1I3-230ENST00000511944 ABCC8Q09428 1581 aa15.16■□□□□ 0.02
NR1I3-230ENST00000511944 OSCARQ8IYS5 282 aa15.16■□□□□ 0.02
NR1I3-230ENST00000511944 PDS5BQ9NTI5 1447 aa15.14■□□□□ 0.01
NR1I3-230ENST00000511944 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
NR1I3-230ENST00000511944 BIVM-ERCC5R4GMW8 1640 aa15.14■□□□□ 0.01
NR1I3-230ENST00000511944 FKBP8Q14318 412 aa15.12■□□□□ 0.01
NR1I3-230ENST00000511944 FANCD2Q9BXW9 1451 aa15.12■□□□□ 0.01
NR1I3-230ENST00000511944 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
NR1I3-230ENST00000511944 EEA1Q15075 1411 aa15.08■□□□□ 0
NR1I3-230ENST00000511944 CEP164Q9UPV0 1460 aa15.07■□□□□ 0
NR1I3-230ENST00000511944 NESP48681 1621 aa15.06■□□□□ 0
NR1I3-230ENST00000511944 CUX1P39880 1505 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms