RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DNM1Q05193 864 aaKnown RBP8.73□□□□□ -1.01
VPS50-219ENST00000495039 TMEM102Q8N9M5 508 aaPredicted RBP8.73□□□□□ -1.01
VPS50-219ENST00000495039 HELQQ8TDG4 1101 aa8.73□□□□□ -1.01
VPS50-219ENST00000495039 SLAIN2Q9P270 581 aa8.73□□□□□ -1.01
VPS50-219ENST00000495039 PDGFAP04085 211 aa8.72□□□□□ -1.01
VPS50-219ENST00000495039 C8orf34Q49A92 452 aa8.72□□□□□ -1.01
VPS50-219ENST00000495039 NUTM2GQ5VZR2 741 aa8.72□□□□□ -1.01
VPS50-219ENST00000495039 PBXIP1Q96AQ6 731 aa8.72□□□□□ -1.01
VPS50-219ENST00000495039 HHIPQ96QV1 700 aa8.72□□□□□ -1.01
VPS50-219ENST00000495039 ATG3Q9NT62 314 aa8.72□□□□□ -1.01
VPS50-219ENST00000495039 TRPA1O75762 1119 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 RXRBP28702 533 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 IKBKEQ14164 716 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 SGO2Q562F6 1265 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 NOM1Q5C9Z4 860 aaKnown RBP8.71□□□□□ -1.02
VPS50-219ENST00000495039 BSNDQ8WZ55 320 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 CHRDQ9H2X0 955 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 GGNBP2Q9H3C7 697 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 CYP4F12Q9HCS2 524 aa8.71□□□□□ -1.02
VPS50-219ENST00000495039 KRTAP4-8A0A0G2JLE6 195 aa8.7□□□□□ -1.02
VPS50-219ENST00000495039 MZF1P28698 734 aaPredicted RBP8.7□□□□□ -1.02
VPS50-219ENST00000495039 CPSF6Q16630 551 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS50-219ENST00000495039 C12orf50Q8NA57 414 aaPredicted RBP8.7□□□□□ -1.02
VPS50-219ENST00000495039 TMPRSS13Q9BYE2 586 aa8.7□□□□□ -1.02
VPS50-219ENST00000495039 SUGCTQ9HAC7 445 aa8.7□□□□□ -1.02
VPS50-219ENST00000495039 ADGRE2Q9UHX3 823 aa8.7□□□□□ -1.02
VPS50-219ENST00000495039 ANGEL1Q9UNK9 670 aaKnown RBP8.7□□□□□ -1.02
VPS50-219ENST00000495039 LEMD3Q9Y2U8 911 aa8.7□□□□□ -1.02
VPS50-219ENST00000495039 A6NHS1 94 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 HOXA10P31260 410 aaPredicted RBP8.69□□□□□ -1.02
VPS50-219ENST00000495039 HGSNATQ68CP4 663 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 SMG8Q8ND04 991 aaKnown RBP8.69□□□□□ -1.02
VPS50-219ENST00000495039 NXPE3Q969Y0 559 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 OSMRQ99650 979 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 ZKSCAN3Q9BRR0 538 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 USP26Q9BXU7 913 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 OSBPL1AQ9BXW6 950 aa8.69□□□□□ -1.02
VPS50-219ENST00000495039 SOX1O00570 391 aaPredicted RBP8.68□□□□□ -1.02
VPS50-219ENST00000495039 TIAF1O95411 115 aa8.68□□□□□ -1.02
VPS50-219ENST00000495039 EDN3P14138 238 aa8.68□□□□□ -1.02
VPS50-219ENST00000495039 VN1R5Q7Z5H4 357 aa8.68□□□□□ -1.02
VPS50-219ENST00000495039 FBXL6Q8N531 539 aa8.68□□□□□ -1.02
VPS50-219ENST00000495039 SOX17Q9H6I2 414 aaPredicted RBP8.68□□□□□ -1.02
VPS50-219ENST00000495039 LOC100289279A0A1B0GTE1 492 aa8.67□□□□□ -1.02
VPS50-219ENST00000495039 F13BP05160 661 aa8.67□□□□□ -1.02
VPS50-219ENST00000495039 FOSL1P15407 271 aa8.67□□□□□ -1.02
VPS50-219ENST00000495039 EIF1AXP47813 144 aaKnown RBP8.67□□□□□ -1.02
VPS50-219ENST00000495039 FAM95CA0A1B0GW59 222 aa8.66□□□□□ -1.02
VPS50-219ENST00000495039 MPSTP25325 297 aa8.66□□□□□ -1.02
VPS50-219ENST00000495039 MSMPQ1L6U9 139 aa8.66□□□□□ -1.02
VPS50-219ENST00000495039 ALKBH2Q6NS38 261 aa8.66□□□□□ -1.02
VPS50-219ENST00000495039 PAOXQ6QHF9 649 aa8.66□□□□□ -1.02
VPS50-219ENST00000495039 ABI1Q8IZP0 508 aa8.66□□□□□ -1.02
VPS50-219ENST00000495039 METTL22Q9BUU2 404 aaPredicted RBP8.66□□□□□ -1.02
VPS50-219ENST00000495039 EREGO14944 169 aa8.65□□□□□ -1.02
VPS50-219ENST00000495039 EIF4EBP3O60516 100 aaPredicted RBP8.65□□□□□ -1.02
VPS50-219ENST00000495039 PHACTR2O75167 634 aa8.65□□□□□ -1.02
VPS50-219ENST00000495039 USP11P51784 963 aa8.65□□□□□ -1.02
VPS50-219ENST00000495039 SNX29Q8TEQ0 813 aa8.65□□□□□ -1.02
VPS50-219ENST00000495039 TNFRSF21O75509 655 aa8.64□□□□□ -1.03
VPS50-219ENST00000495039 NFKBIBQ15653 356 aa8.64□□□□□ -1.03
VPS50-219ENST00000495039 EXOSC6Q5RKV6 272 aaKnown RBP8.64□□□□□ -1.03
VPS50-219ENST00000495039 ASAP3Q8TDY4 903 aa8.64□□□□□ -1.03
VPS50-219ENST00000495039 CCDC97Q96F63 343 aaPredicted RBP8.64□□□□□ -1.03
VPS50-219ENST00000495039 YIPF2Q9BWQ6 316 aa8.64□□□□□ -1.03
VPS50-219ENST00000495039 BHLHE41Q9C0J9 482 aaPredicted RBP8.64□□□□□ -1.03
VPS50-219ENST00000495039 POLIQ9UNA4 740 aa8.64□□□□□ -1.03
VPS50-219ENST00000495039 PRNPP04156 253 aa8.63□□□□□ -1.03
VPS50-219ENST00000495039 ESRRAP11474 423 aaPredicted RBP8.63□□□□□ -1.03
VPS50-219ENST00000495039 EHHADHQ08426 723 aa8.63□□□□□ -1.03
VPS50-219ENST00000495039 VSIG10LQ86VR7 867 aa8.63□□□□□ -1.03
VPS50-219ENST00000495039 GTF3C2Q8WUA4 911 aaPredicted RBP8.63□□□□□ -1.03
VPS50-219ENST00000495039 FBXL18Q96ME1 805 aa8.63□□□□□ -1.03
VPS50-219ENST00000495039 CCDC39Q9UFE4 941 aa8.63□□□□□ -1.03
VPS50-219ENST00000495039 DLGAP3O95886 979 aa8.62□□□□□ -1.03
VPS50-219ENST00000495039 DRD2P14416 443 aa8.62□□□□□ -1.03
VPS50-219ENST00000495039 FBLIM1Q8WUP2 373 aa8.62□□□□□ -1.03
VPS50-219ENST00000495039 USP5P45974 858 aa8.61□□□□□ -1.03
VPS50-219ENST00000495039 GSTM4Q03013 218 aa8.61□□□□□ -1.03
VPS50-219ENST00000495039 AAMPQ13685 434 aa8.61□□□□□ -1.03
VPS50-219ENST00000495039 CDPF1Q6NVV7 123 aa8.61□□□□□ -1.03
VPS50-219ENST00000495039 C2CD4AQ8NCU7 369 aaPredicted RBP8.61□□□□□ -1.03
VPS50-219ENST00000495039 TBC1D32Q96NH3 1257 aa8.61□□□□□ -1.03
VPS50-219ENST00000495039 SERPINA10Q9UK55 444 aa8.61□□□□□ -1.03
VPS50-219ENST00000495039 CYP26A1O43174 497 aa8.6□□□□□ -1.03
VPS50-219ENST00000495039 SOX4Q06945 474 aaPredicted RBP8.6□□□□□ -1.03
VPS50-219ENST00000495039 EZH1Q92800 747 aaPredicted RBP8.6□□□□□ -1.03
VPS50-219ENST00000495039 FOXD3Q9UJU5 478 aaPredicted RBP8.6□□□□□ -1.03
VPS50-219ENST00000495039 AMOTL2Q9Y2J4 779 aa8.6□□□□□ -1.03
VPS50-219ENST00000495039 ZAR1Q86SH2 424 aa8.59□□□□□ -1.03
VPS50-219ENST00000495039 TP53INP2Q8IXH6 220 aa8.59□□□□□ -1.03
VPS50-219ENST00000495039 BSDC1Q9NW68 430 aaPredicted RBP8.59□□□□□ -1.03
VPS50-219ENST00000495039 PRKAG2Q9UGJ0 569 aa8.59□□□□□ -1.03
VPS50-219ENST00000495039 NPR3P17342 541 aa8.58□□□□□ -1.04
VPS50-219ENST00000495039 FZD5Q13467 585 aa8.58□□□□□ -1.04
VPS50-219ENST00000495039 MTMR3Q13615 1198 aa8.58□□□□□ -1.04
VPS50-219ENST00000495039 PEAR1Q5VY43 1037 aaPredicted RBP8.58□□□□□ -1.04
VPS50-219ENST00000495039 CBLL1Q75N03 491 aa8.58□□□□□ -1.04
VPS50-219ENST00000495039 SHISA5Q8N114 240 aa8.58□□□□□ -1.04
VPS50-219ENST00000495039 LATS2Q9NRM7 1088 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms