RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 PITPNM2Q9BZ72 1349 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 EYA2O00167 538 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 BCAR3O75815 825 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 PDE8BO95263 885 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 NBPF9Q3BBW0 867 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 MFSD14BQ5SR56 506 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 INTS3Q68E01 1043 aaKnown RBP11.35□□□□□ -0.59
HDAC6-232ENST00000489053 CYP4F22Q6NT55 531 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 SAPCD2Q86UD0 394 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 APOBEC3FQ8IUX4 373 aaKnown RBP11.35□□□□□ -0.59
HDAC6-232ENST00000489053 KLHDC4Q8TBB5 520 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 CDCA5Q96FF9 252 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 RIPOR2Q9Y4F9 1068 aa11.35□□□□□ -0.59
HDAC6-232ENST00000489053 GNAI2P04899 355 aa11.34□□□□□ -0.59
HDAC6-232ENST00000489053 TRIM27P14373 513 aa11.34□□□□□ -0.59
HDAC6-232ENST00000489053 CTCFP49711 727 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-232ENST00000489053 TBC1D22AQ8WUA7 517 aa11.34□□□□□ -0.59
HDAC6-232ENST00000489053 MEIS3Q99687 375 aa11.34□□□□□ -0.59
HDAC6-232ENST00000489053 VEZTQ9HBM0 779 aa11.34□□□□□ -0.59
HDAC6-232ENST00000489053 FBXO3Q9UK99 471 aa11.34□□□□□ -0.59
HDAC6-232ENST00000489053 IQSEC3Q9UPP2 1182 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-232ENST00000489053 ASTN2O75129 1339 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-232ENST00000489053 WNT10BO00744 389 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 SRGAP3O43295 1099 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 MS4A1P11836 297 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 IL15P40933 162 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-232ENST00000489053 ZNF157P51786 506 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-232ENST00000489053 FKBP1AP62942 108 aaKnown RBP11.33□□□□□ -0.6
HDAC6-232ENST00000489053 FKBP1BP68106 108 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 NOGQ13253 232 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 ATP2B3Q16720 1220 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 CFAP100Q494V2 611 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 ITPRIPQ8IWB1 547 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 LPIN2Q92539 896 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 CCDC102AQ96A19 550 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 HHIPL1Q96JK4 782 aa11.33□□□□□ -0.6
HDAC6-232ENST00000489053 FAM84BQ96KN1 310 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-232ENST00000489053 TTF2Q9UNY4 1162 aaKnown RBP11.33□□□□□ -0.6
HDAC6-232ENST00000489053 CIAO1O76071 339 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 MAP2K2P36507 400 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 PTPN12Q05209 780 aaKnown RBP11.32□□□□□ -0.6
HDAC6-232ENST00000489053 OS9Q13438 667 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-232ENST00000489053 GORABQ5T7V8 394 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 RGMBQ6NW40 437 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 DLK2Q6UY11 383 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 TDRD7Q8NHU6 1098 aaKnown RBP11.32□□□□□ -0.6
HDAC6-232ENST00000489053 TMOD2Q9NZR1 351 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 FAM205AQ6ZU69 1335 aa11.32□□□□□ -0.6
HDAC6-232ENST00000489053 SCN9AQ15858 1988 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 AOC2O75106 756 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 BCAMP50895 628 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 G3BP1Q13283 466 aaKnown RBP eCLIP11.31□□□□□ -0.6
HDAC6-232ENST00000489053 TNFAIP1Q13829 316 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 ARMC9Q7Z3E5 817 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 FBXO33Q7Z6M2 555 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 DZIP1LQ8IYY4 767 aaKnown RBP11.31□□□□□ -0.6
HDAC6-232ENST00000489053 TNS4Q8IZW8 715 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 CERS5Q8N5B7 392 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 SERPINA10Q9UK55 444 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 AKAP2Q9Y2D5 859 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 MAST3O60307 1309 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 IRS2Q9Y4H2 1338 aa11.31□□□□□ -0.6
HDAC6-232ENST00000489053 CLRN2A0PK11 232 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 CA12O43570 354 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 TNNI2P48788 182 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 SUPT20HL1Q3ZLR7 823 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 TMEM57Q8N5G2 664 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 WDR66Q8TBY9 1149 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 TEKT1Q969V4 418 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 WBP1LQ9NX94 342 aa11.3□□□□□ -0.6
HDAC6-232ENST00000489053 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-232ENST00000489053 SCAF8Q9UPN6 1271 aaKnown RBP11.3□□□□□ -0.6
HDAC6-232ENST00000489053 PA2G4Q9UQ80 394 aaKnown RBP11.3□□□□□ -0.6
HDAC6-232ENST00000489053 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 FOXN1O15353 648 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 PPP1R12BO60237 982 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-232ENST00000489053 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 RFX5P48382 616 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-232ENST00000489053 PRKG1Q13976 671 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 PRAMEF18Q5VWM3 479 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 VGLL2Q8N8G2 317 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 MTMR14Q8NCE2 650 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 DEFB129Q9H1M3 183 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 COPRSQ9NQ92 184 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 PPP2R3BQ9Y5P8 575 aa11.29□□□□□ -0.6
HDAC6-232ENST00000489053 CRKP46108 304 aa11.28□□□□□ -0.6
HDAC6-232ENST00000489053 MVPQ14764 893 aaKnown RBP11.28□□□□□ -0.6
HDAC6-232ENST00000489053 ATG9AQ7Z3C6 839 aa11.28□□□□□ -0.6
HDAC6-232ENST00000489053 ZGPATQ8N5A5 531 aaKnown RBP11.28□□□□□ -0.6
HDAC6-232ENST00000489053 NEUROD6Q96NK8 337 aa11.28□□□□□ -0.6
HDAC6-232ENST00000489053 DENND2AQ9ULE3 1009 aa11.28□□□□□ -0.6
HDAC6-232ENST00000489053 SUGT1Q9Y2Z0 365 aa11.28□□□□□ -0.6
HDAC6-232ENST00000489053 COL1A1P02452 1464 aaPredicted RBP11.27□□□□□ -0.6
HDAC6-232ENST00000489053 SEMA3EO15041 775 aa11.27□□□□□ -0.61
HDAC6-232ENST00000489053 FGFR2P21802 821 aa11.27□□□□□ -0.61
HDAC6-232ENST00000489053 IREB2P48200 963 aaKnown RBP11.27□□□□□ -0.61
HDAC6-232ENST00000489053 LBX1P52954 281 aa11.27□□□□□ -0.61
HDAC6-232ENST00000489053 COL13A1Q5TAT6 717 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-232ENST00000489053 REM2Q8IYK8 340 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-232ENST00000489053 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms