RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	FBXO33	Q7Z6M2	555 aa		13.97	□□□□□ -0.17
CKS1B-206	ENST00000474215	C2orf69	Q8N8R5	385 aa		13.97	□□□□□ -0.17
CKS1B-206	ENST00000474215	CLUAP1	Q96AJ1	413 aa		13.97	□□□□□ -0.17
CKS1B-206	ENST00000474215	HHIPL1	Q96JK4	782 aa		13.97	□□□□□ -0.17
CKS1B-206	ENST00000474215	CAPNS2	Q96L46	248 aa		13.97	□□□□□ -0.17
CKS1B-206	ENST00000474215	FBXO3	Q9UK99	471 aa		13.97	□□□□□ -0.17
CKS1B-206	ENST00000474215	FAM205A	Q6ZU69	1335 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	TRPM7	Q96QT4	1865 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	PUM3	Q15397	648 aa	Known RBP	13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	ZKSCAN2	Q63HK3	967 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	ATG9A	Q7Z3C6	839 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	VPS37D	Q86XT2	251 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	CDCA5	Q96FF9	252 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	GBA2	Q9HCG7	927 aa	Predicted RBP	13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	TNN	Q9UQP3	1299 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215	JAG2	Q9Y219	1238 aa		13.96	□□□□□ -0.17
CKS1B-206	ENST00000474215		A0A1B0GUL6	1792 aa		13.96	□□□□□ -0.18
CKS1B-206	ENST00000474215	CIAO1	O76071	339 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	IFIT1	P09914	478 aa	Known RBP	13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	FGFR2	P21802	821 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	HUNK	P57058	714 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	GRM1	Q13255	1194 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	DLGAP5	Q15398	846 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	ZBED3	Q96IU2	234 aa	Predicted RBP	13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	SIL1	Q9H173	461 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	WBP1L	Q9NX94	342 aa		13.95	□□□□□ -0.18
CKS1B-206	ENST00000474215	ZNF646	O15015	1829 aa	Predicted RBP	13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215		F8W031	263 aa	Predicted RBP	13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	MAP2K2	P36507	400 aa		13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	BCAM	P50895	628 aa		13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	MAP2K1	Q02750	393 aa	Predicted RBP	13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	MTMR14	Q8NCE2	650 aa		13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	COPRS	Q9NQ92	184 aa		13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	CEP126	Q9P2H0	1117 aa		13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	SCAF8	Q9UPN6	1271 aa	Known RBP	13.94	□□□□□ -0.18
CKS1B-206	ENST00000474215	FRAT2	O75474	233 aa	Predicted RBP	13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	IL15	P40933	162 aa	Predicted RBP	13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	MTX1	Q13505	466 aa		13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	MFSD14B	Q5SR56	506 aa		13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	TMEM57	Q8N5G2	664 aa		13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	LPIN2	Q92539	896 aa		13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	AIDA	Q96BJ3	306 aa		13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.93	□□□□□ -0.18
CKS1B-206	ENST00000474215	FOXN1	O15353	648 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	SRGAP3	O43295	1099 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	AOC2	O75106	756 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	GNAI2	P04899	355 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	SLC5A1	P13866	664 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	CFAP100	Q494V2	611 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	PRAMEF18	Q5VWM3	479 aa		13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	PA2G4	Q9UQ80	394 aa	Known RBP	13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	POLR2A	P24928	1970 aa	Known RBP	13.92	□□□□□ -0.18
CKS1B-206	ENST00000474215	SPDYE2B	A6NHP3	402 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	MYO1B	O43795	1136 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	SPDYE6	P0CI01	402 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	RBM5	P52756	815 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	FKBP1B	P68106	108 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	CHAF1A	Q13111	956 aa	Predicted RBP	13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	ATP2B3	Q16720	1220 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	RGMB	Q6NW40	437 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	DZIP1L	Q8IYY4	767 aa	Known RBP	13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	TBC1D22A	Q8WUA7	517 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	PRMT6	Q96LA8	375 aa	Predicted RBP	13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	SERPINA10	Q9UK55	444 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	TTF2	Q9UNY4	1162 aa	Known RBP	13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	PCDHAC2	Q9Y5I4	1007 aa		13.91	□□□□□ -0.18
CKS1B-206	ENST00000474215	CTCF	P49711	727 aa	Predicted RBP	13.9	□□□□□ -0.18
CKS1B-206	ENST00000474215	ZNF157	P51786	506 aa	Predicted RBP	13.9	□□□□□ -0.18
CKS1B-206	ENST00000474215	NOG	Q13253	232 aa		13.9	□□□□□ -0.18
CKS1B-206	ENST00000474215	FTSJ3	Q8IY81	847 aa	Known RBP	13.9	□□□□□ -0.18
CKS1B-206	ENST00000474215	CCDC102A	Q96A19	550 aa		13.9	□□□□□ -0.18
CKS1B-206	ENST00000474215	NF2	P35240	595 aa		13.89	□□□□□ -0.19
CKS1B-206	ENST00000474215	BEGAIN	Q9BUH8	593 aa		13.89	□□□□□ -0.19
CKS1B-206	ENST00000474215	DEFB129	Q9H1M3	183 aa		13.89	□□□□□ -0.19
CKS1B-206	ENST00000474215	CLRN2	A0PK11	232 aa		13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	FAM155A	B1AL88	458 aa	Predicted RBP	13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	UBE2Q2L	H0YL09	131 aa		13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	RLBP1	P12271	317 aa		13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	HDLBP	Q00341	1268 aa	Known RBP	13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	GRIK5	Q16478	980 aa		13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	MRI	Q9BWK5	157 aa		13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	GNL3L	Q9NVN8	582 aa	Known RBP	13.88	□□□□□ -0.19
CKS1B-206	ENST00000474215	PNMA6E	A0A0J9YXQ4	647 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	ZBTB7B	O15156	539 aa	Predicted RBP	13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	CRK	P46108	304 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	TIMM10	P62072	90 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	TFCP2	Q12800	502 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	TTLL12	Q14166	644 aa	Predicted RBP	13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	IFFO2	Q5TF58	517 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	MOB2	Q70IA6	237 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	ITPRIP	Q8IWB1	547 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	WDR66	Q8TBY9	1149 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	ZIC5	Q96T25	663 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	VEZT	Q9HBM0	779 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	PRDM10	Q9NQV6	1147 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	AKAP2	Q9Y2D5	859 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	SUGT1	Q9Y2Z0	365 aa		13.87	□□□□□ -0.19
CKS1B-206	ENST00000474215	PPP2R3B	Q9Y5P8	575 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms