RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 NXPE3Q969Y0 559 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 RNF208Q9H0X6 261 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 LATS2Q9NRM7 1088 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 EDN3P14138 238 aa8.11□□□□□ -1.11
CCDC88A-210ENST00000468534 IKBKEQ14164 716 aa8.11□□□□□ -1.11
CCDC88A-210ENST00000468534 ANKRD34AQ69YU3 496 aa8.11□□□□□ -1.11
CCDC88A-210ENST00000468534 BSNDQ8WZ55 320 aa8.11□□□□□ -1.11
CCDC88A-210ENST00000468534 USP26Q9BXU7 913 aa8.11□□□□□ -1.11
CCDC88A-210ENST00000468534 CCDC87Q9NVE4 849 aa8.11□□□□□ -1.11
CCDC88A-210ENST00000468534 SOX1O00570 391 aaPredicted RBP8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 GAS2O43903 313 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 FZD6O60353 706 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 MED26O95402 600 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 POLR3DP05423 398 aaPredicted RBP8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 NPR3P17342 541 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 CD97P48960 835 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 FKBP4Q02790 459 aaKnown RBP eCLIP8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 EHHADHQ08426 723 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 FAM20CQ8IXL6 584 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 AMOTL2Q9Y2J4 779 aa8.1□□□□□ -1.11
CCDC88A-210ENST00000468534 COBLO75128 1261 aa8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 USP5P45974 858 aa8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 SF3B2Q13435 895 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 RNF43Q68DV7 783 aa8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 BEND4Q6ZU67 534 aa8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 VN1R5Q7Z5H4 357 aa8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 ZDHHC13Q8IUH4 622 aa8.09□□□□□ -1.11
CCDC88A-210ENST00000468534 METTL12A8MUP2 240 aa8.08□□□□□ -1.12
CCDC88A-210ENST00000468534 CLEC10AQ8IUN9 316 aa8.08□□□□□ -1.12
CCDC88A-210ENST00000468534 DBNDD2Q9BQY9 259 aa8.08□□□□□ -1.12
CCDC88A-210ENST00000468534 KRTAP9-2Q9BYQ4 174 aa8.08□□□□□ -1.12
CCDC88A-210ENST00000468534 RXRBP28702 533 aa8.07□□□□□ -1.12
CCDC88A-210ENST00000468534 PEAR1Q5VY43 1037 aaPredicted RBP8.07□□□□□ -1.12
CCDC88A-210ENST00000468534 NUTM2GQ5VZR2 741 aa8.07□□□□□ -1.12
CCDC88A-210ENST00000468534 C14orf37Q86TY3 774 aa8.07□□□□□ -1.12
CCDC88A-210ENST00000468534 FAM83CQ9BQN1 747 aa8.07□□□□□ -1.12
CCDC88A-210ENST00000468534 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 GSTM4Q03013 218 aa8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 SGO2Q562F6 1265 aa8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 GJD3Q8N144 294 aa8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 C12orf50Q8NA57 414 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 SHKBP1Q8TBC3 707 aa8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 BHLHE41Q9C0J9 482 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 ZFYVE28Q9HCC9 887 aa8.06□□□□□ -1.12
CCDC88A-210ENST00000468534 GRIK1P39086 918 aa8.05□□□□□ -1.12
CCDC88A-210ENST00000468534 KRTAP9-6A0A140TA67 174 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 LOC100289279A0A1B0GTE1 492 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 PRR19A6NJB7 356 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 H3BRB1 525 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 DLGAP3O95886 979 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 ESRRAP11474 423 aaPredicted RBP8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 MAP4P27816 1152 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 MFSD14AQ96MC6 490 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 TUT1Q9H6E5 874 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 HIF3AQ9Y2N7 669 aa8.04□□□□□ -1.12
CCDC88A-210ENST00000468534 MEGF11A6BM72 1044 aa8.03□□□□□ -1.12
CCDC88A-210ENST00000468534 KIAA1324LA8MWY0 1029 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-210ENST00000468534 WDR64B1ANS9 1081 aa8.03□□□□□ -1.12
CCDC88A-210ENST00000468534 SERPINB4P48594 390 aa8.03□□□□□ -1.12
CCDC88A-210ENST00000468534 TMPRSS13Q9BYE2 586 aa8.03□□□□□ -1.12
CCDC88A-210ENST00000468534 CYP4F12Q9HCS2 524 aa8.03□□□□□ -1.12
CCDC88A-210ENST00000468534 DRD2P14416 443 aa8.02□□□□□ -1.13
CCDC88A-210ENST00000468534 MCTP1Q6DN14 999 aa8.02□□□□□ -1.13
CCDC88A-210ENST00000468534 GLYCTKQ8IVS8 523 aa8.02□□□□□ -1.13
CCDC88A-210ENST00000468534 FBXL6Q8N531 539 aa8.02□□□□□ -1.13
CCDC88A-210ENST00000468534 BRPF3Q9ULD4 1205 aa8.02□□□□□ -1.13
CCDC88A-210ENST00000468534 ICMTO60725 284 aa8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 USP11P51784 963 aa8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 GP2P55259 537 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 NFKBIBQ15653 356 aa8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 INTS5Q6P9B9 1019 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 SMG8Q8ND04 991 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 SOX17Q9H6I2 414 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 LIN7BQ9HAP6 207 aa8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 OAS3Q9Y6K5 1087 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-210ENST00000468534 A0A096LPE4 126 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 A0A1W2PP55 124 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 A0A1W2PPZ6 126 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 ADAMTS4O75173 837 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 GRIA4P48058 902 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 PCDH1Q08174 1060 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 SPRED3Q2MJR0 410 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 USPL1Q5W0Q7 1092 aa8□□□□□ -1.13
CCDC88A-210ENST00000468534 TIAF1O95411 115 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 SPINK2P20155 84 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 HOXA10P31260 410 aaPredicted RBP7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 IRAK1P51617 712 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 EXOSC6Q5RKV6 272 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 B4GALNT3Q6L9W6 998 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 NPM2Q86SE8 214 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 GALNT12Q8IXK2 581 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 FBLIM1Q8WUP2 373 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 ARID3AQ99856 593 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 SUGCTQ9HAC7 445 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 ATG3Q9NT62 314 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 EGFL7Q9UHF1 273 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 USTQ9Y2C2 406 aa7.99□□□□□ -1.13
CCDC88A-210ENST00000468534 FAM95CA0A1B0GW59 222 aa7.98□□□□□ -1.13
CCDC88A-210ENST00000468534 CDPF1Q6NVV7 123 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms