RNA–Protein interactions for RNA: ENST00000422489.1

NUP50-206, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 543 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-206	ENST00000422489	LRRC24	Q50LG9	513 aa		11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	METTL24	Q5JXM2	366 aa		11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	ANKRD44	Q8N8A2	993 aa		11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	KLHDC4	Q8TBB5	520 aa		11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	ZIC5	Q96T25	663 aa		11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	RIPOR2	Q9Y4F9	1068 aa		11.66	□□□□□ -0.54
NUP50-206	ENST00000422489	IRS2	Q9Y4H2	1338 aa		11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	FRAT2	O75474	233 aa	Predicted RBP	11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	MMP14	P50281	582 aa		11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	DIEXF	Q68CQ4	756 aa	Known RBP	11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	MOB2	Q70IA6	237 aa		11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	VPS37D	Q86XT2	251 aa		11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	MIER1	Q8N108	512 aa		11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	CERS5	Q8N5B7	392 aa		11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	FAM84B	Q96KN1	310 aa	Predicted RBP	11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	API5	Q9BZZ5	524 aa	Known RBP	11.65	□□□□□ -0.54
NUP50-206	ENST00000422489	PITPNM2	Q9BZ72	1349 aa		11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	ZNF609	O15014	1411 aa		11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	CT47B1	P0C2W7	299 aa	Predicted RBP	11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	NF2	P35240	595 aa		11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	BRPF1	P55201	1214 aa	Predicted RBP	11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	RABL6	Q3YEC7	729 aa	Predicted RBP	11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	CFAP100	Q494V2	611 aa		11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	PCDHAC2	Q9Y5I4	1007 aa		11.64	□□□□□ -0.55
NUP50-206	ENST00000422489	FAM155A	B1AL88	458 aa	Predicted RBP	11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	UBTFL1	P0CB47	393 aa	Predicted RBP	11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	RARS	P54136	660 aa	Known RBP	11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	CHAF1A	Q13111	956 aa	Predicted RBP	11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	CAVIN4	Q5BKX8	364 aa		11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	TDRD7	Q8NHU6	1098 aa	Known RBP	11.63	□□□□□ -0.55
NUP50-206	ENST00000422489	CLRN2	A0PK11	232 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	CA12	O43570	354 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	MYO1B	O43795	1136 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	PDE8B	O95263	885 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	FKBP1A	P62942	108 aa	Known RBP	11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	FKBP1B	P68106	108 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	MFSD14B	Q5SR56	506 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	FRAT1	Q92837	279 aa	Predicted RBP	11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	PRMT6	Q96LA8	375 aa	Predicted RBP	11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	DEFB129	Q9H1M3	183 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	VEZT	Q9HBM0	779 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	TTF2	Q9UNY4	1162 aa	Known RBP	11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	HDAC5	Q9UQL6	1122 aa		11.62	□□□□□ -0.55
NUP50-206	ENST00000422489	FAM205A	Q6ZU69	1335 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	SCN9A	Q15858	1988 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	EYA2	O00167	538 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	BCAM	P50895	628 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	ARMC9	Q7Z3E5	817 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	FBXO33	Q7Z6M2	555 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	ZBED3	Q96IU2	234 aa	Predicted RBP	11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	SIL1	Q9H173	461 aa		11.61	□□□□□ -0.55
NUP50-206	ENST00000422489		U3KPZ7	1027 aa	Predicted RBP	11.61	□□□□□ -0.55
NUP50-206	ENST00000422489	IPO8	O15397	1037 aa	Known RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	TRPA1	O75762	1119 aa		11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	SLC10A3	P09131	477 aa		11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	IFIT1	P09914	478 aa	Known RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	RFX5	P48382	616 aa	Predicted RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	PTPN12	Q05209	780 aa	Known RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	MKRN3	Q13064	507 aa	Known RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	RASAL3	Q86YV0	1011 aa		11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	MTMR14	Q8NCE2	650 aa		11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	CSRNP1	Q96S65	589 aa		11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	ANGEL1	Q9UNK9	670 aa	Known RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	LRRFIP2	Q9Y608	721 aa	Known RBP	11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	SPEF2	Q9C093	1822 aa		11.6	□□□□□ -0.55
NUP50-206	ENST00000422489	SPDYE2B	A6NHP3	402 aa		11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	BCAR3	O75815	825 aa		11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	SPDYE6	P0CI01	402 aa		11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	PUM3	Q15397	648 aa	Known RBP	11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	TDRD3	Q9H7E2	651 aa	Known RBP	11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	RNF186	Q9NXI6	227 aa		11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	CEP126	Q9P2H0	1117 aa		11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	FZD1	Q9UP38	647 aa		11.59	□□□□□ -0.55
NUP50-206	ENST00000422489	PPP1R12B	O60237	982 aa	Predicted RBP	11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	SLC5A1	P13866	664 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	CRK	P46108	304 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	GRIK5	Q16478	980 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	SUPT20HL1	Q3ZLR7	823 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	VGLL2	Q8N8G2	317 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	TBC1D22A	Q8WUA7	517 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	LPIN2	Q92539	896 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	ARHGAP45	Q92619	1136 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	CLUAP1	Q96AJ1	413 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	SLC10A4	Q96EP9	437 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	MEIS3	Q99687	375 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	ZNF70	Q9UC06	446 aa	Predicted RBP	11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	SERPINA10	Q9UK55	444 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	MYH3	P11055	1940 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	AOX1	Q06278	1338 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	KIF16B	Q96L93	1317 aa		11.58	□□□□□ -0.56
NUP50-206	ENST00000422489	TRPM7	Q96QT4	1865 aa		11.57	□□□□□ -0.56
NUP50-206	ENST00000422489	TCP10L2	B9ZVM9	353 aa		11.57	□□□□□ -0.56
NUP50-206	ENST00000422489	GNAI3	P08754	354 aa		11.57	□□□□□ -0.56
NUP50-206	ENST00000422489	FGFR2	P21802	821 aa		11.57	□□□□□ -0.56
NUP50-206	ENST00000422489	RASA3	Q14644	834 aa		11.57	□□□□□ -0.56
NUP50-206	ENST00000422489	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.57	□□□□□ -0.56

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