RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 RTEL1-TNFRSF6BF6WH68 1400 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 GNAT3A8MTJ3 354 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 MAP3K7CLP57077 242 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 DYNC1I2Q13409 638 aaKnown RBP6.21□□□□□ -1.42
PTPRB-202ENST00000334414 RILPL1Q5EBL4 403 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 ZNF213O14771 459 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 PDE6BP35913 854 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 UBLCP1Q8WVY7 318 aaPredicted RBP6.21□□□□□ -1.42
PTPRB-202ENST00000334414 KDM5AP29375 1690 aaKnown RBP6.21□□□□□ -1.42
PTPRB-202ENST00000334414 LGSNQ5TDP6 509 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 BICD1Q96G01 975 aa6.21□□□□□ -1.42
PTPRB-202ENST00000334414 GCC2Q8IWJ2 1684 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 PRXQ9BXM0 1461 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 UBXN1Q04323 297 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 APLFQ8IW19 511 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 VPS52Q8N1B4 723 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 NOX5Q96PH1 765 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 SATB2Q9UPW6 733 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 TDRD9Q8NDG6 1382 aaKnown RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 MYL5Q02045 173 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 RRAGBQ5VZM2 374 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 NECTIN2Q92692 538 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 WDHD1O75717 1129 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 CDC25BP30305 580 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 GSTO1P78417 241 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 FAM160A1Q05DH4 1040 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 INF2Q27J81 1249 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 AOPEPQ8N6M6 819 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 NEK11Q8NG66 645 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 GRK7Q8WTQ7 553 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 TRERF1Q96PN7 1200 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 IMPG2Q9BZV3 1241 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ATP6V0A2Q9Y487 856 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 FLOT1O75955 427 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 APBB1IPQ7Z5R6 666 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 USP48Q86UV5 1035 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 TBC1D31Q96DN5 1066 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 CENPKQ9BS16 269 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ACTR5Q9H9F9 607 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 HOMER3Q9NSC5 361 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ZSCAN26Q16670 478 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 CFAP221Q4G0U5 840 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 CAVIN4Q5BKX8 364 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 TMTC1Q8IUR5 882 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 CCDC63Q8NA47 563 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 TMX3Q96JJ7 454 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 PIK3C2GO75747 1445 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 RNF40O75150 1001 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 FKBP4Q02790 459 aaKnown RBP eCLIP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 POLE3Q9NRF9 147 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 KLHL14Q9P2G3 628 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 PEG3Q9GZU2 1588 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 TATP17735 454 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 IBSPP21815 317 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-202ENST00000334414 MLECQ14165 292 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ANKRD20A4Q4UJ75 823 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ANKRD20A8PQ5CZ79 823 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ANKRD20A2Q5SQ80 823 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ANKRD20A1Q5TYW2 823 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 ATP2A3Q93084 1043 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 NEK1Q96PY6 1258 aa6.2□□□□□ -1.42
PTPRB-202ENST00000334414 UHRF1BP1Q6BDS2 1440 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 TROVE2P10155 538 aaKnown RBP eCLIP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 APOBRQ0VD83 1088 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 GTF3C6Q969F1 213 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 TUBB6Q9BUF5 446 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 ZNF652Q9Y2D9 606 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 SLC5A1P13866 664 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 UBA7P41226 1012 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 NBPF9Q3BBW0 867 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 MYO1AQ9UBC5 1043 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 CALML3P27482 149 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 OAS2P29728 719 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 LMNB2Q03252 620 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 NMIQ13287 307 aaPredicted RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 RNF8O76064 485 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 GNAT2P19087 354 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 ECHDC1Q9NTX5 307 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 LRP2BPQ9P2M1 347 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 BTBD11A6QL63 1104 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 GFAPP14136 432 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 PSMD7P51665 324 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 MRPS9P82933 396 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 PDCD7Q8N8D1 485 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 VEZTQ9HBM0 779 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 CAPS2Q9BXY5 557 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 RPL13P26373 211 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 PHBP35232 272 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 GNAQP50148 359 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 FBXO41Q8TF61 875 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 STK10O94804 968 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 LRRC23Q53EV4 343 aaPredicted RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 TSR2Q969E8 191 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 LMNAP02545 664 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 TRIM58Q8NG06 486 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 CNOT10Q9H9A5 744 aaKnown RBP6.19□□□□□ -1.42
PTPRB-202ENST00000334414 MSH6P52701 1360 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 DENND2CQ68D51 928 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 FERMT3Q86UX7 667 aa6.19□□□□□ -1.42
PTPRB-202ENST00000334414 SECISBP2LQ93073 1101 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms