RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 HELBQ8NG08 1087 aaPredicted RBP20.38■□□□□ 0.85
COL9A1-201ENST00000320755 A0A1B0GVL5 298 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 ZNF213O14771 459 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 STARD3NLO95772 234 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 PCCAP05165 728 aaPredicted RBP20.38■□□□□ 0.85
COL9A1-201ENST00000320755 RXRAP19793 462 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 ZBTB38Q8NAP3 1195 aaPredicted RBP20.38■□□□□ 0.85
COL9A1-201ENST00000320755 MYRIPQ8NFW9 859 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 SPTLC3Q9NUV7 552 aa20.38■□□□□ 0.85
COL9A1-201ENST00000320755 ORC3Q9UBD5 711 aaPredicted RBP20.38■□□□□ 0.85
COL9A1-201ENST00000320755 COL5A2P05997 1499 aaPredicted RBP20.37■□□□□ 0.85
COL9A1-201ENST00000320755 SLC9C2Q5TAH2 1124 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 C8orf76Q96K31 380 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 SDF4Q9BRK5 362 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 CLIP2Q9UDT6 1046 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 KCPQ6ZWJ8 1503 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 BECN2A8MW95 431 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 MCAMP43121 646 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 APPBP2Q92624 585 aa20.37■□□□□ 0.85
COL9A1-201ENST00000320755 TPM3P06753 285 aa20.36■□□□□ 0.85
COL9A1-201ENST00000320755 TDRD7Q8NHU6 1098 aaKnown RBP20.36■□□□□ 0.85
COL9A1-201ENST00000320755 TRMT112Q9UI30 125 aaKnown RBP20.36■□□□□ 0.85
COL9A1-201ENST00000320755 TBC1D2BQ9UPU7 963 aa20.36■□□□□ 0.85
COL9A1-201ENST00000320755 LAMA4Q16363 1823 aa20.36■□□□□ 0.85
COL9A1-201ENST00000320755 SNW1Q13573 536 aaKnown RBP20.36■□□□□ 0.85
COL9A1-201ENST00000320755 PCDHA7Q9UN72 937 aa20.36■□□□□ 0.85
COL9A1-201ENST00000320755 ZFYP08048 801 aaPredicted RBP20.35■□□□□ 0.85
COL9A1-201ENST00000320755 STK38Q15208 465 aa20.35■□□□□ 0.85
COL9A1-201ENST00000320755 CLIC4Q9Y696 253 aa20.35■□□□□ 0.85
COL9A1-201ENST00000320755 SALL1Q9NSC2 1324 aa20.35■□□□□ 0.85
COL9A1-201ENST00000320755 CCDC144CPQ8IYA2 1237 aa20.35■□□□□ 0.85
COL9A1-201ENST00000320755 NCOA7Q8NI08 942 aa20.35■□□□□ 0.85
COL9A1-201ENST00000320755 TTLL11Q8NHH1 800 aa20.35■□□□□ 0.85
COL9A1-201ENST00000320755 BCL11BQ9C0K0 894 aaPredicted RBP20.35■□□□□ 0.85
COL9A1-201ENST00000320755 LAMB4A4D0S4 1761 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 SNAP23O00161 211 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 ANTXR2P58335 489 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 KLHL34Q8N239 644 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 FAM160A1Q05DH4 1040 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 PLA2G4DQ86XP0 818 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 NKX2-3Q8TAU0 364 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.34■□□□□ 0.85
COL9A1-201ENST00000320755 BTG4Q9NY30 223 aa20.34■□□□□ 0.85
COL9A1-201ENST00000320755 IRS4O14654 1257 aaPredicted RBP20.33■□□□□ 0.85
COL9A1-201ENST00000320755 CSF1RP07333 972 aa20.33■□□□□ 0.85
COL9A1-201ENST00000320755 GIGYF2Q6Y7W6 1299 aaKnown RBP20.33■□□□□ 0.85
COL9A1-201ENST00000320755 NLRP10Q86W26 655 aa20.33■□□□□ 0.85
COL9A1-201ENST00000320755 PRIMPOLQ96LW4 560 aa20.33■□□□□ 0.85
COL9A1-201ENST00000320755 C16orf45Q96MC5 204 aaPredicted RBP20.33■□□□□ 0.85
COL9A1-201ENST00000320755 AIFM3Q96NN9 605 aa20.33■□□□□ 0.85
COL9A1-201ENST00000320755 INCENPQ9NQS7 918 aa20.33■□□□□ 0.85
COL9A1-201ENST00000320755 RIPOR2Q9Y4F9 1068 aa20.33■□□□□ 0.85
COL9A1-201ENST00000320755 ANKRD18BA2A2Z9 1011 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 TRDNQ13061 729 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 ARID5BQ14865 1188 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 STX1AQ16623 288 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 CCDC144BQ3MJ40 725 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 MB21D2Q8IYB1 491 aaPredicted RBP20.33■□□□□ 0.84
COL9A1-201ENST00000320755 HPS5Q9UPZ3 1129 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 TRIM28Q13263 835 aaKnown RBP20.33■□□□□ 0.84
COL9A1-201ENST00000320755 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.33■□□□□ 0.84
COL9A1-201ENST00000320755 TJP1Q07157 1748 aa20.33■□□□□ 0.84
COL9A1-201ENST00000320755 ABCC6O95255 1503 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 MAP3K15Q6ZN16 1313 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 CHAF1AQ13111 956 aaPredicted RBP20.32■□□□□ 0.84
COL9A1-201ENST00000320755 IQCB1Q15051 598 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 ZSCAN25Q6NSZ9 544 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 FILIP1Q7Z7B0 1213 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 STK11IPQ8N1F8 1099 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 ZBTB1Q9Y2K1 713 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 SOS2Q07890 1332 aaPredicted RBP20.32■□□□□ 0.84
COL9A1-201ENST00000320755 BIN1O00499 593 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 NDUFA8P51970 172 aa20.32■□□□□ 0.84
COL9A1-201ENST00000320755 CACTINQ8WUQ7 758 aaKnown RBP20.32■□□□□ 0.84
COL9A1-201ENST00000320755 PIH1D3Q9NQM4 214 aaKnown RBP20.32■□□□□ 0.84
COL9A1-201ENST00000320755 DHX16O60231 1041 aaKnown RBP20.31■□□□□ 0.84
COL9A1-201ENST00000320755 PHKA1P46020 1223 aa20.31■□□□□ 0.84
COL9A1-201ENST00000320755 SYNE3Q6ZMZ3 975 aa20.31■□□□□ 0.84
COL9A1-201ENST00000320755 ENGASEQ8NFI3 743 aa20.31■□□□□ 0.84
COL9A1-201ENST00000320755 MRPS27Q92552 414 aaKnown RBP20.31■□□□□ 0.84
COL9A1-201ENST00000320755 ZNF335Q9H4Z2 1342 aaPredicted RBP20.31■□□□□ 0.84
COL9A1-201ENST00000320755 CTAGE5O15320 804 aa20.31■□□□□ 0.84
COL9A1-201ENST00000320755 TEX13AQ9BXU3 409 aaPredicted RBP20.31■□□□□ 0.84
COL9A1-201ENST00000320755 CTSWP56202 376 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 FBXO18Q8NFZ0 1043 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 MARCKSP29966 332 aaPredicted RBP20.3■□□□□ 0.84
COL9A1-201ENST00000320755 ZRSR1Q15695 479 aaKnown RBP20.3■□□□□ 0.84
COL9A1-201ENST00000320755 NUP188Q5SRE5 1749 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 ISM2Q6H9L7 571 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 AOPEPQ8N6M6 819 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 SLC4A9Q96Q91 983 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 SENP2Q9HC62 589 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 PLEKHG2Q9H7P9 1386 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 B4E1Z4 1266 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 KIF28PB7ZC32 967 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 RIOK3O14730 519 aaKnown RBP20.3■□□□□ 0.84
COL9A1-201ENST00000320755 MICU3Q86XE3 530 aa20.3■□□□□ 0.84
COL9A1-201ENST00000320755 ZNF532Q9HCE3 1301 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 TBC1D10CQ8IV04 446 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 LINC00301Q8NCQ3 95 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms