RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 UTP11Q9Y3A2 253 aaKnown RBP12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 RPGRIP1LQ68CZ1 1315 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 A0A087WZG4 1122 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 TSC1Q92574 1164 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 MAK16Q9BXY0 300 aaKnown RBP12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 CCDC159P0C7I6 412 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 AMOTQ4VCS5 1084 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 ANLNQ9NQW6 1124 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 WDR46O15213 610 aaKnown RBP12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 SESN3P58005 492 aa12.56□□□□□ -0.4
HDGFL3-201ENST00000299633 CCDC68Q9H2F9 335 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 KANK3Q6NY19 840 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 TRIM55Q9BYV6 548 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 GPR161Q8N6U8 529 aaKnown RBP12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 SYCP3Q8IZU3 236 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 CENPKQ9BS16 269 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 CABP1Q9NZU7 370 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 SRGAP3O43295 1099 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 FKBP4Q02790 459 aaKnown RBP eCLIP12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 U3KPZ7 1027 aaPredicted RBP12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 NAIPQ13075 1403 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 IFT81Q8WYA0 676 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 LRSAM1Q6UWE0 723 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 FSIP1Q8NA03 581 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 POLD1P28340 1107 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 SLFN5Q08AF3 891 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 ENAHQ8N8S7 591 aaPredicted RBP12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 SKILP12757 684 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 KRT10P13645 584 aa12.55□□□□□ -0.4
HDGFL3-201ENST00000299633 CCDC125Q86Z20 511 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 SDCCAG3Q96C92 435 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 EEF2P13639 858 aaKnown RBP12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 LMNB2Q03252 620 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 ESRRGP62508 458 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 PDZD8Q8NEN9 1154 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 NCAPD3P42695 1498 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 POTEB3A0JP26 581 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 POTEBQ6S5H4 581 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 TTC3P53804 2025 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 ARHGEF11O15085 1522 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 TERF1P54274 439 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 MIS18AQ9NYP9 233 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 AMPD3Q01432 767 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 KLHL40Q2TBA0 621 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 AFAP1Q8N556 730 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 TBC1D32Q96NH3 1257 aa12.54□□□□□ -0.4
HDGFL3-201ENST00000299633 DUSP27Q5VZP5 1158 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 NUTM1Q86Y26 1132 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 PLCB1Q9NQ66 1216 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 FBXO2Q9UK22 296 aaPredicted RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 GABPB1Q06547 395 aaPredicted RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 PLEKHO1Q53GL0 409 aaPredicted RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 ISM2Q6H9L7 571 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 HAUS7Q99871 368 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 FAM169AQ9Y6X4 670 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 LMNAP02545 664 aaKnown RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 SRGAP1Q7Z6B7 1085 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 CAPN7Q9Y6W3 813 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 UTP14CQ5TAP6 766 aaKnown RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 CALML4Q96GE6 196 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 VEZTQ9HBM0 779 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 CCDC26Q8TAB7 109 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 UIMC1Q96RL1 719 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 RABEP2Q9H5N1 569 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 RILPL1Q5EBL4 403 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 BIVM-ERCC5R4GMW8 1640 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 TMEM110-MUSTN1A8MSY1 372 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 UAP1Q16222 522 aaPredicted RBP12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 FLCNQ8NFG4 579 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 C8orf76Q96K31 380 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 CTTNBP2NLQ9P2B4 639 aa12.53□□□□□ -0.4
HDGFL3-201ENST00000299633 PRXQ9BXM0 1461 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 E9PMD0 336 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 RHOXF2BP0C7M4 288 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 RHOXF2Q9BQY4 288 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 YY1AP1Q9H869 796 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 HIP1RO75146 1068 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 CYB5RLQ6IPT4 315 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 IL1RAPL2Q9NP60 686 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 ZNF165P49910 485 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 VSIG1Q86XK7 387 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 PTGS1P23219 599 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 ESCO1Q5FWF5 840 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 TXNDC2Q86VQ3 553 aa12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 PPANQ9NQ55 473 aaKnown RBP12.52□□□□□ -0.4
HDGFL3-201ENST00000299633 ITIH3Q06033 890 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 CNPY2Q9Y2B0 182 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 TTC19Q6DKK2 380 aaPredicted RBP12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 SPDL1Q96EA4 605 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 ANKRD30BQ9BXX2 1392 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 EXOC6BQ9Y2D4 811 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 N4BP3O15049 544 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 WBP4O75554 376 aaKnown RBP12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 BAG2O95816 211 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 RTEL1-TNFRSF6BF6WH68 1400 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 NOP14P78316 857 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms