RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Bend4P86174 541 aa25.29■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Utp18Q5SSI6 552 aaKnown RBP25.29■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 KinQ8K339 391 aa25.29■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Cyp2c69E9PXC3 491 aa25.28■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Nedd4P46935 887 aaKnown RBP25.28■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Cyp2c40P56657 491 aa25.28■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Insm1Q63ZV0 521 aa25.28■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Ell2Q3UKU1 639 aa25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Best3Q6H1V1 669 aa25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Ptcd1Q8C2E4 695 aaKnown RBP25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Usp44Q8C2S0 711 aa25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Ccdc7Q9D541 371 aa25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Ptf1aQ9QX98 324 aa25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Psma5Q9Z2U1 241 aaKnown RBP25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 Golgb1E9PVZ8 3238 aa25.27■■□□□ 1.64
Ccdc88a-202ENSMUST00000109477 TrhQ62361 256 aa25.26■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Mrpl12Q9DB15 201 aaKnown RBP25.26■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Stat5bP42232 786 aa25.26■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Gm5592Q3V0A6 857 aa25.26■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Tti2Q8BGV4 512 aa25.26■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Ttc5Q99LG4 440 aa25.26■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Ppp1r21Q3TDD9 780 aa25.25■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Washc4Q3UMB9 1173 aa25.25■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Rbm15bQ6PHZ5 887 aaKnown RBP25.25■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Cypt1Q8CH20 168 aa25.25■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Rnaseh2aQ9CWY8 301 aa25.25■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Vwa3bJ9JI28 736 aa25.24■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Tuft1O08970 390 aa25.24■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Sept12Q9D451 317 aa25.24■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Q9D9S1 216 aa25.24■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Pcdhb9E9Q5G2 828 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Rassf8Q8CJ96 419 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Cchcr1Q8K2I2 770 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 MthfsQ9D110 203 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Sytl4Q9R0Q1 673 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Gdf11Q9Z1W4 405 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Prl7a2O54831 253 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Csf1rP09581 977 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Cyp2d9P11714 504 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Atp6v1dP57746 247 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Chrna5Q2MKA5 467 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Filip1lQ6P6L0 1131 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 B4galnt4Q766D5 1034 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 SnrkQ8VDU5 748 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Cdca7lQ922M5 438 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Letm1Q9Z2I0 738 aa25.23■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Casq1O09165 405 aa25.22■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Spg7Q3ULF4 781 aa25.22■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Carmil3Q3UFQ8 1375 aa25.22■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Sik3Q6P4S6 1311 aa25.21■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Mapkapk5O54992 473 aa25.21■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Olfm5Q8BU90 496 aa25.21■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Fbxl16A2RT62 479 aa25.2■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Krt40Q6IFX3 439 aa25.2■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Tmem67Q8BR76 992 aa25.2■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Lmod1Q8BVA4 595 aa25.2■■□□□ 1.63
Ccdc88a-202ENSMUST00000109477 Btaf1E9QAE3 1848 aa25.2■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Mast3Q3U214 1321 aa25.2■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Zbtb7aO88939 569 aaKnown RBP25.2■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Ccdc51Q3URS9 406 aa25.2■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Fchsd1Q6PFY1 688 aa25.2■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 FktnQ8R507 461 aa25.2■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Irgm2A0A140LIF8 407 aa25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 1700006A11RikB9EHI3 544 aa25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 PnnO35691 725 aaKnown RBP25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Atp6v1aP50516 617 aaKnown RBP25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Alx1Q8C8B0 326 aa25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Rbm33Q9CXK9 1231 aaKnown RBP25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 IcoslgQ9JHJ8 322 aa25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Myoz2Q9JJW5 264 aa25.19■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Frmd7A2AD83 703 aa25.18■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 ArsiQ32KI9 573 aa25.18■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Sp8Q8BMJ8 486 aa25.18■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Rps6kb1Q8BSK8 525 aa25.18■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Spire2Q8K1S6 718 aa25.18■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Usp42B2RQC2 1324 aaKnown RBP25.18■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Rsph3aQ3UFY4 516 aa25.17■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Rufy3Q9D394 469 aa25.17■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Chmp4cQ9D7F7 232 aa25.17■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 FAM186AQ9D9R9 1790 aa25.17■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Fam83bQ0VBM2 1012 aa25.16■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Ddx19aQ61655 478 aaKnown RBP25.16■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Cyp24a1Q64441 514 aa25.16■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Gpr101Q80T62 511 aa25.16■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 ImmtQ8CAQ8 757 aaKnown RBP25.16■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Slc51aQ8R000 340 aa25.16■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Krt24A1L317 512 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 CrcpO35427 148 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Cfap69Q8BH53 942 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 WdpcpQ8C456 722 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Tbc1d7Q9D0K0 293 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Col5a2Q3U962 1497 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 D830030K20RikE9PYQ5 218 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Gm3043K7N693 218 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Gm16440K7N6G6 218 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Gm2244L7N2A3 218 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Gm3278L7N2D2 218 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Gm8271L7N2E2 218 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Siah1aP61092 282 aa25.15■■□□□ 1.62
Ccdc88a-202ENSMUST00000109477 Spty2d1Q68FG3 682 aa25.15■■□□□ 1.62
Retrieved 100 of 22,080 RNA–protein pairs in 15.5 ms