RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PSMG3-AS1Q96PY0 264 aa16.68■□□□□ 0.26
CLN3-205ENST00000359984 MTFP1Q9UDX5 166 aa16.68■□□□□ 0.26
CLN3-205ENST00000359984 IGKV1D-17A0A075B6S4 117 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 OR2AT4A6NND4 320 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 LYNX1G3V0Z9 82 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 IFNL4K9M1U5 179 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 SLC33A1O00400 549 aaPredicted RBP16.67■□□□□ 0.26
CLN3-205ENST00000359984 CA11O75493 328 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 LYNX1P0DP58 116 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 PRDX2P32119 198 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 BPIFB2Q8N4F0 458 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 CD177Q8N6Q3 437 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 IGFBPL1Q8WX77 278 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 LINC00854A0A1B0GVQ3 168 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 MCRIP1C9JLW8 97 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 OVOL3O00110 214 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 HSPB6O14558 160 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 RBBP9O75884 186 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 LY6HO94772 140 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 HFEQ30201 348 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 TEX36Q5VZQ5 186 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 DEFB108BQ8NET1 73 aa16.67■□□□□ 0.26
CLN3-205ENST00000359984 HDHD3Q9BSH5 251 aaPredicted RBP16.67■□□□□ 0.26
CLN3-205ENST00000359984 DPCDQ9BVM2 203 aaPredicted RBP16.67■□□□□ 0.26
CLN3-205ENST00000359984 DSCAMO60469 2012 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 OOEPA6NGQ2 149 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 GLAP06280 429 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 FCER2P06734 321 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 LMO1P25800 156 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 MICBQ29980 383 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 ANGPTL6Q8NI99 470 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 SEBOXQ9HB31 216 aaPredicted RBP16.66■□□□□ 0.26
CLN3-205ENST00000359984 METRNQ9UJH8 293 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 ZNF222Q9UK12 451 aa16.66■□□□□ 0.26
CLN3-205ENST00000359984 LGALS8O00214 317 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 MUC1P15941 1255 aaPredicted RBP16.65■□□□□ 0.26
CLN3-205ENST00000359984 INPP1P49441 399 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 COL10A1Q03692 680 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 PAN3Q58A45 887 aaKnown RBP16.65■□□□□ 0.26
CLN3-205ENST00000359984 ZNF57Q68EA5 555 aaPredicted RBP16.65■□□□□ 0.26
CLN3-205ENST00000359984 CMSS1Q9BQ75 279 aaKnown RBP16.65■□□□□ 0.26
CLN3-205ENST00000359984 PSPNO60542 156 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 RP2O75695 350 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 GABRA2P47869 451 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 STUMQ69YW2 141 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 TOMM5Q8N4H5 51 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 GVQW1Q8N7I0 195 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 NEK7Q8TDX7 302 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 C14orf79Q96F83 325 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 OCSTAMPQ9BR26 566 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 TANC2Q9HCD6 1990 aa16.65■□□□□ 0.26
CLN3-205ENST00000359984 PPIAL4EA0A075B759 164 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 TMEM82A0PJX8 343 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 PPIAL4DF5H284 164 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 NDUFS7O75251 213 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 PPIAL4FP0DN26 164 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 AMY2BP19961 511 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 MRPS11P82912 194 aaKnown RBP16.64■□□□□ 0.25
CLN3-205ENST00000359984 SSBP1Q04837 148 aaKnown RBP16.64■□□□□ 0.25
CLN3-205ENST00000359984 RBM39Q14498 530 aaKnown RBP16.64■□□□□ 0.25
CLN3-205ENST00000359984 PPA2Q9H2U2 334 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 DLL4Q9NR61 685 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 PPIAL4AQ9Y536 164 aa16.64■□□□□ 0.25
CLN3-205ENST00000359984 CRYBG3Q68DQ2 2970 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 TRAV38-1A0A0B4J264 116 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 ANKRD20A5PA0PJZ0 165 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 GYPAP02724 150 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 DAOP14920 347 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 KLF9Q13886 244 aaPredicted RBP16.63■□□□□ 0.25
CLN3-205ENST00000359984 C17orf107Q6ZR85 190 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 CHST6Q9GZX3 395 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 IFT46Q9NQC8 304 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 ZNF230Q9UIE0 474 aaPredicted RBP16.63■□□□□ 0.25
CLN3-205ENST00000359984 ANAPC10Q9UM13 185 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 AKAP6Q13023 2319 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 F12P00748 615 aaPredicted RBP16.63■□□□□ 0.25
CLN3-205ENST00000359984 GSTT2BP0CG30 244 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 CBX5P45973 191 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 ACTBP60709 375 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 ACTG1P63261 375 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 DUSP18Q8NEJ0 188 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 CCL19Q99731 98 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 MMP28Q9H239 520 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 LIME1Q9H400 295 aa16.63■□□□□ 0.25
CLN3-205ENST00000359984 DOPEY2Q9Y3R5 2298 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 LYRM1O43325 122 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 ZNF737O75373 536 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 RCVRNP35243 200 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 OR3A1P47881 315 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 MRPS15P82914 257 aaKnown RBP16.62■□□□□ 0.25
CLN3-205ENST00000359984 SHEQ5VZ18 495 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 ASCC1Q8N9N2 400 aaKnown RBP16.62■□□□□ 0.25
CLN3-205ENST00000359984 OR4S1Q8NGB4 309 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 PLPPR1Q8TBJ4 325 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 SDSLQ96GA7 329 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 ST6GALNAC5Q9BVH7 336 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 SHARPINQ9H0F6 387 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 TMEM165Q9HC07 324 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 C12orf4Q9NQ89 552 aa16.62■□□□□ 0.25
CLN3-205ENST00000359984 MAB21L2Q9Y586 359 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms