RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	RTT107	P38850	1070 aa		10.88	□□□□□ -0.67
SHB17	YKR043C	YGL036W	P53185	909 aa	Predicted RBP	10.88	□□□□□ -0.67
SHB17	YKR043C	UME1	Q03010	460 aa		10.88	□□□□□ -0.67
SHB17	YKR043C	PRM6	Q04705	352 aa		10.88	□□□□□ -0.67
SHB17	YKR043C	YLR287C	Q05881	355 aa		10.88	□□□□□ -0.67
SHB17	YKR043C	NOP4	P37838	685 aa	Known RBP	10.87	□□□□□ -0.67
SHB17	YKR043C	YBR056W	P38081	501 aa		10.87	□□□□□ -0.67
SHB17	YKR043C	SGO1	Q08490	590 aa		10.87	□□□□□ -0.67
SHB17	YKR043C	HMG2	P12684	1045 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	MET4	P32389	672 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	LEO1	P38439	464 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	PHO86	P46956	311 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	VPS25	P47142	202 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	MND1	P53102	219 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	TSR1	Q07381	788 aa	Known RBP	10.86	□□□□□ -0.67
SHB17	YKR043C	TRE1	Q08919	783 aa		10.86	□□□□□ -0.67
SHB17	YKR043C	RRP6	Q12149	733 aa	Known RBP	10.86	□□□□□ -0.67
SHB17	YKR043C	RPS3	P05750	240 aa	Known RBP	10.85	□□□□□ -0.67
SHB17	YKR043C	PPR1	P07272	904 aa	Predicted RBP	10.85	□□□□□ -0.67
SHB17	YKR043C	MPE1	P35728	441 aa	Known RBP	10.85	□□□□□ -0.67
SHB17	YKR043C	YMC2	P38087	329 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	RAD55	P38953	406 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	MMM1	P41800	426 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	IES1	P43579	692 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	GPD1	Q00055	391 aa	Known RBP	10.85	□□□□□ -0.67
SHB17	YKR043C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	10.85	□□□□□ -0.67	RIP-Chip
SHB17	YKR043C	HER2	Q03557	464 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	HMI1	Q12039	706 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	RRD2	Q12461	358 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	YOL098C	Q12496	1037 aa		10.85	□□□□□ -0.67
SHB17	YKR043C	TRP2	P00899	507 aa	Known RBP	10.84	□□□□□ -0.67
SHB17	YKR043C	YER152C	P10356	443 aa		10.84	□□□□□ -0.67
SHB17	YKR043C	CLC1	P17891	233 aa		10.84	□□□□□ -0.67
SHB17	YKR043C	LRE1	P25579	583 aa	Known RBP	10.84	□□□□□ -0.67
SHB17	YKR043C	ASG7	P46993	209 aa		10.84	□□□□□ -0.67
SHB17	YKR043C	STR2	P47164	639 aa		10.84	□□□□□ -0.67
SHB17	YKR043C	SPE3	Q12074	293 aa	Known RBP	10.84	□□□□□ -0.67
SHB17	YKR043C	RAD59	Q12223	238 aa		10.84	□□□□□ -0.67
SHB17	YKR043C	KEX2	P13134	814 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	SPO12	P17123	173 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	MIC60	P36112	540 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	CDC27	P38042	758 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	EXO5	P38289	585 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	PUS2	P53167	370 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	FMP25	Q08023	583 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	VPS54	Q12071	889 aa		10.83	□□□□□ -0.68
SHB17	YKR043C	YKR051W	P36142	418 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	YEL075C	P39972	122 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	SHQ1	P40486	507 aa	Predicted RBP	10.82	□□□□□ -0.68
SHB17	YKR043C	HXT8	P40886	569 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	YNR014W	P53719	212 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	CEG1	Q01159	459 aa	Predicted RBP	10.82	□□□□□ -0.68
SHB17	YKR043C	ARO80	Q04052	950 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	YDR344C	Q05510	147 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	ATG9	Q12142	997 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	NBP2	Q12163	236 aa		10.82	□□□□□ -0.68
SHB17	YKR043C	PEX34	P25584	144 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	PDC6	P26263	563 aa	Known RBP	10.81	□□□□□ -0.68
SHB17	YKR043C	PPZ1	P26570	692 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	RAD16	P31244	790 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	MRP4	P32902	394 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	TSA1	P34760	196 aa	Known RBP	10.81	□□□□□ -0.68
SHB17	YKR043C	JNM1	P36224	373 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	YBL036C	P38197	257 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	CBR1	P38626	284 aa	Known RBP	10.81	□□□□□ -0.68
SHB17	YKR043C	SFB3	P38810	929 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	SMC2	P38989	1170 aa	Known RBP	10.81	□□□□□ -0.68
SHB17	YKR043C	FHL1	P39521	936 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	RPT2	P40327	437 aa	Known RBP	10.81	□□□□□ -0.68
SHB17	YKR043C	YTA12	P40341	825 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	GUF1	P46943	645 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	UTP8	P53276	713 aa	Known RBP	10.81	□□□□□ -0.68
SHB17	YKR043C	DDC1	Q08949	612 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	SAM3	Q08986	587 aa		10.81	□□□□□ -0.68
SHB17	YKR043C	JIP3	O13555	125 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	BET2	P20133	325 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	GYP6	P32806	458 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	ABZ1	P37254	787 aa	Predicted RBP	10.8	□□□□□ -0.68
SHB17	YKR043C	YAP5	P40574	245 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	LSB6	P42951	607 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	PFD1	P46988	109 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	PSP1	P50896	841 aa	Known RBP	10.8	□□□□□ -0.68
SHB17	YKR043C	LEE1	Q02799	301 aa	Known RBP	10.8	□□□□□ -0.68
SHB17	YKR043C	NSE5	Q03718	556 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	PML39	Q03760	334 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	RCL1	Q08096	367 aa	Predicted RBP	10.8	□□□□□ -0.68
SHB17	YKR043C	DIS3	Q08162	1001 aa	Known RBP	10.8	□□□□□ -0.68
SHB17	YKR043C	MDM38	Q08179	573 aa		10.8	□□□□□ -0.68
SHB17	YKR043C	NEW1	Q08972	1196 aa	Known RBP	10.8	□□□□□ -0.68
SHB17	YKR043C	IMG2	P25642	146 aa	Predicted RBP	10.79	□□□□□ -0.68
SHB17	YKR043C	ISF1	P32488	338 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	DSS4	P32601	143 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	BTT1	P40314	149 aa	Predicted RBP	10.79	□□□□□ -0.68
SHB17	YKR043C	ATG3	P40344	310 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	HOP2	P53187	214 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	ERG5	P54781	538 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	YPL062W	Q02781	134 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	ECM22	Q05958	814 aa	Predicted RBP	10.79	□□□□□ -0.68
SHB17	YKR043C	YPQ1	Q12010	308 aa		10.79	□□□□□ -0.68
SHB17	YKR043C	APL4	Q12028	832 aa		10.79	□□□□□ -0.68

Retrieved 100 of 5,963 RNA–protein pairs in 89.2 ms