RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	GIC1	P38785	314 aa		5.68	□□□□□ -1.5
UBP9	YER098W	ERR3	P42222	437 aa		5.68	□□□□□ -1.5
UBP9	YER098W	IES1	P43579	692 aa		5.68	□□□□□ -1.5
UBP9	YER098W	ROG3	P43602	733 aa		5.68	□□□□□ -1.5
UBP9	YER098W	LRS4	Q04087	347 aa	Known RBP	5.68	□□□□□ -1.5
UBP9	YER098W	YOR223W	Q12015	292 aa		5.68	□□□□□ -1.5
UBP9	YER098W	YLL058W	Q12198	575 aa		5.68	□□□□□ -1.5
UBP9	YER098W	SLP1	Q12232	587 aa		5.68	□□□□□ -1.5
UBP9	YER098W	RPS21B	Q3E754	87 aa	Known RBP	5.68	□□□□□ -1.5
UBP9	YER098W	RAD3	P06839	778 aa		5.67	□□□□□ -1.5
UBP9	YER098W	RNR2	P09938	399 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	MAE1	P36013	669 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	RFC5	P38251	354 aa		5.67	□□□□□ -1.5
UBP9	YER098W	YAP3	P38749	330 aa		5.67	□□□□□ -1.5
UBP9	YER098W	HOS4	P40480	1083 aa		5.67	□□□□□ -1.5
UBP9	YER098W	CTH1	P47976	325 aa		5.67	□□□□□ -1.5
UBP9	YER098W	YKE2	P52553	114 aa		5.67	□□□□□ -1.5
UBP9	YER098W	NPY1	P53164	384 aa		5.67	□□□□□ -1.5
UBP9	YER098W	NCE103	P53615	221 aa		5.67	□□□□□ -1.5
UBP9	YER098W	SFB2	P53953	876 aa		5.67	□□□□□ -1.5
UBP9	YER098W	PEX19	Q07418	342 aa		5.67	□□□□□ -1.5
UBP9	YER098W	HRK1	Q08732	759 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	YSP2	Q06681	1438 aa		5.67	□□□□□ -1.5
UBP9	YER098W	PHO81	P17442	1178 aa		5.67	□□□□□ -1.5
UBP9	YER098W	HCA4	P20448	770 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	ZUO1	P32527	433 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	MDJ1	P35191	511 aa		5.67	□□□□□ -1.5
UBP9	YER098W	NNK1	P36003	928 aa		5.67	□□□□□ -1.5
UBP9	YER098W	RLP7	P40693	322 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	PTA1	Q01329	785 aa	Predicted RBP	5.67	□□□□□ -1.5
UBP9	YER098W	SRT1	Q03175	343 aa		5.67	□□□□□ -1.5
UBP9	YER098W	TY1A-MR1	Q04215	440 aa		5.67	□□□□□ -1.5
UBP9	YER098W	RRB1	Q04225	511 aa	Known RBP	5.67	□□□□□ -1.5
UBP9	YER098W	YPR196W	Q06595	470 aa		5.67	□□□□□ -1.5
UBP9	YER098W	SYT1	Q06836	1226 aa		5.67	□□□□□ -1.5
UBP9	YER098W	NUP192	P47054	1683 aa		5.66	□□□□□ -1.5
UBP9	YER098W	INH1	P01097	85 aa		5.66	□□□□□ -1.5
UBP9	YER098W	FRS2	P15625	503 aa	Known RBP	5.66	□□□□□ -1.5
UBP9	YER098W	MCM10	P32354	571 aa		5.66	□□□□□ -1.5
UBP9	YER098W	MNT3	P40549	630 aa		5.66	□□□□□ -1.5
UBP9	YER098W	MTC3	P53077	123 aa		5.66	□□□□□ -1.5
UBP9	YER098W	CAF120	P53836	1060 aa		5.66	□□□□□ -1.5
UBP9	YER098W	VPS30	Q02948	557 aa		5.66	□□□□□ -1.5
UBP9	YER098W	SGD1	Q06132	899 aa		5.66	□□□□□ -1.5
UBP9	YER098W	YSH1	Q06224	779 aa	Predicted RBP	5.66	□□□□□ -1.5
UBP9	YER098W	YOL114C	Q12322	202 aa		5.66	□□□□□ -1.5
UBP9	YER098W	SMY2	P32909	740 aa	Known RBP	5.65	□□□□□ -1.5
UBP9	YER098W	NPR3	P38742	1146 aa		5.65	□□□□□ -1.5
UBP9	YER098W	RPT2	P40327	437 aa	Known RBP	5.65	□□□□□ -1.5
UBP9	YER098W	HYR1	P40581	163 aa	Known RBP	5.65	□□□□□ -1.5
UBP9	YER098W	HFI1	Q12060	488 aa		5.65	□□□□□ -1.5
UBP9	YER098W	ERP4	Q12450	207 aa		5.65	□□□□□ -1.5
UBP9	YER098W	TY4B-P	A0A0B7P3V8	1104 aa		5.65	□□□□□ -1.51
UBP9	YER098W	SNF5	P18480	905 aa		5.65	□□□□□ -1.51
UBP9	YER098W	MBR1	P23493	339 aa		5.65	□□□□□ -1.51
UBP9	YER098W	DPH5	P32469	300 aa	Predicted RBP	5.65	□□□□□ -1.51
UBP9	YER098W	OAF3	P36023	863 aa		5.65	□□□□□ -1.51
UBP9	YER098W	YKR051W	P36142	418 aa		5.65	□□□□□ -1.51
UBP9	YER098W	IML2	P47031	731 aa		5.65	□□□□□ -1.51
UBP9	YER098W	SPO1	P53541	631 aa		5.65	□□□□□ -1.51
UBP9	YER098W	CNM67	P53865	581 aa	Known RBP	5.65	□□□□□ -1.51
UBP9	YER098W	YNL050C	P53952	270 aa		5.65	□□□□□ -1.51
UBP9	YER098W	NEW1	Q08972	1196 aa	Known RBP	5.65	□□□□□ -1.51
UBP9	YER098W	TY4A-H	Q6Q5P6	413 aa		5.65	□□□□□ -1.51
UBP9	YER098W	LYS2	P07702	1392 aa		5.64	□□□□□ -1.51
UBP9	YER098W	HSC82	P15108	705 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	PDC5	P16467	563 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	PET123	P17558	318 aa		5.64	□□□□□ -1.51
UBP9	YER098W	SEC18	P18759	758 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	YSC84	P32793	468 aa		5.64	□□□□□ -1.51
UBP9	YER098W	NFU1	P32860	256 aa		5.64	□□□□□ -1.51
UBP9	YER098W	CEM1	P39525	442 aa		5.64	□□□□□ -1.51
UBP9	YER098W	TNA1	P53322	534 aa		5.64	□□□□□ -1.51
UBP9	YER098W	NOG2	P53742	486 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	GTR1	Q00582	310 aa		5.64	□□□□□ -1.51
UBP9	YER098W	CEG1	Q01159	459 aa	Predicted RBP	5.64	□□□□□ -1.51
UBP9	YER098W	YBR182C-A	Q8TGU6	64 aa		5.64	□□□□□ -1.51
UBP9	YER098W	DIF1	O13577	133 aa		5.64	□□□□□ -1.51
UBP9	YER098W	RFA1	P22336	621 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	SEC14	P24280	304 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	BEM3	P32873	1128 aa		5.64	□□□□□ -1.51
UBP9	YER098W	OLA1	P38219	394 aa	Known RBP	5.64	□□□□□ -1.51
UBP9	YER098W	FAT1	P38225	669 aa		5.64	□□□□□ -1.51
UBP9	YER098W	ALG14	P38242	237 aa		5.64	□□□□□ -1.51
UBP9	YER098W	NDE1	P40215	560 aa		5.64	□□□□□ -1.51
UBP9	YER098W	CTK3	P46963	296 aa	Predicted RBP	5.64	□□□□□ -1.51
UBP9	YER098W	TPP1	Q03796	238 aa		5.64	□□□□□ -1.51
UBP9	YER098W	ERV41	Q04651	352 aa		5.64	□□□□□ -1.51
UBP9	YER098W	CRR1	Q05790	422 aa		5.64	□□□□□ -1.51
UBP9	YER098W	HIM1	Q06674	414 aa		5.64	□□□□□ -1.51
UBP9	YER098W	DUR1,2	P32528	1835 aa	Known RBP	5.63	□□□□□ -1.51
UBP9	YER098W	AUS1	Q08409	1394 aa		5.63	□□□□□ -1.51
UBP9	YER098W	SHR5	P41912	237 aa		5.63	□□□□□ -1.51
UBP9	YER098W	BRE2	P43132	505 aa		5.63	□□□□□ -1.51
UBP9	YER098W	MOT3	P54785	490 aa	Known RBP	5.63	□□□□□ -1.51
UBP9	YER098W	RCL1	Q08096	367 aa	Predicted RBP	5.63	□□□□□ -1.51
UBP9	YER098W	APM4	Q99186	491 aa		5.63	□□□□□ -1.51
UBP9	YER098W	Q0142	Q9ZZW4	58 aa		5.63	□□□□□ -1.51
UBP9	YER098W	IML1	P47170	1584 aa		5.63	□□□□□ -1.51
UBP9	YER098W	VAS1	P07806	1104 aa	Known RBP	5.63	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 19.4 ms