RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeast

Gene PRE1, Length 597 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE1	YER012W	NDJ1	Q12366	352 aa		4.7	□□□□□ -1.66
PRE1	YER012W	HRP1	Q99383	534 aa	Known RBP	4.7	□□□□□ -1.66
PRE1	YER012W	YKR051W	P36142	418 aa		4.69	□□□□□ -1.66
PRE1	YER012W	NDC80	P40460	691 aa		4.69	□□□□□ -1.66
PRE1	YER012W	NPY1	P53164	384 aa		4.69	□□□□□ -1.66
PRE1	YER012W	CTK1	Q03957	528 aa	Known RBP	4.69	□□□□□ -1.66
PRE1	YER012W	YKL033W-A	Q86ZR7	236 aa		4.69	□□□□□ -1.66
PRE1	YER012W	CHD1	P32657	1468 aa		4.69	□□□□□ -1.66
PRE1	YER012W	BNI1	P41832	1953 aa		4.68	□□□□□ -1.66
PRE1	YER012W	TUB1	P09733	447 aa	Known RBP	4.68	□□□□□ -1.66
PRE1	YER012W	ADY2	P25613	283 aa		4.68	□□□□□ -1.66
PRE1	YER012W	SRP40	P32583	406 aa	Predicted RBP	4.68	□□□□□ -1.66
PRE1	YER012W	ORC4	P54791	529 aa		4.68	□□□□□ -1.66
PRE1	YER012W	ARG5,6	Q01217	863 aa		4.68	□□□□□ -1.66
PRE1	YER012W	MLH3	Q12083	715 aa		4.68	□□□□□ -1.66
PRE1	YER012W	YOR131C	Q12486	218 aa		4.68	□□□□□ -1.66
PRE1	YER012W	YOL098C	Q12496	1037 aa		4.68	□□□□□ -1.66
PRE1	YER012W	MYO2	P19524	1574 aa	Known RBP	4.67	□□□□□ -1.66
PRE1	YER012W	SIR3	P06701	978 aa		4.67	□□□□□ -1.66
PRE1	YER012W	PYC1	P11154	1178 aa	Known RBP	4.67	□□□□□ -1.66
PRE1	YER012W	MIH1	P23748	554 aa		4.67	□□□□□ -1.66
PRE1	YER012W	MEF1	P25039	761 aa		4.67	□□□□□ -1.66
PRE1	YER012W	PHO11	P35842	467 aa		4.67	□□□□□ -1.66
PRE1	YER012W	PHO12	P38693	467 aa		4.67	□□□□□ -1.66
PRE1	YER012W	DSS1	P39112	969 aa		4.67	□□□□□ -1.66
PRE1	YER012W	NUP60	P39705	539 aa		4.67	□□□□□ -1.66
PRE1	YER012W	BNA2	P47125	453 aa		4.67	□□□□□ -1.66
PRE1	YER012W	NNF1	P47149	201 aa		4.67	□□□□□ -1.66
PRE1	YER012W	IMO32	P53219	342 aa		4.67	□□□□□ -1.66
PRE1	YER012W	YKL091C	P33324	310 aa	Known RBP	4.66	□□□□□ -1.66
PRE1	YER012W	APL2	P36000	726 aa	Predicted RBP	4.66	□□□□□ -1.66
PRE1	YER012W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
PRE1	YER012W	ECM1	P39715	212 aa		4.66	□□□□□ -1.66
PRE1	YER012W	GET2	P40056	285 aa		4.66	□□□□□ -1.66
PRE1	YER012W	YIL166C	P40445	542 aa		4.66	□□□□□ -1.66
PRE1	YER012W	ARO10	Q06408	635 aa		4.66	□□□□□ -1.66
PRE1	YER012W	TAF3	Q12297	353 aa		4.66	□□□□□ -1.66
PRE1	YER012W	DMC1	P25453	334 aa		4.65	□□□□□ -1.67
PRE1	YER012W	VBA3	P25594	458 aa		4.65	□□□□□ -1.67
PRE1	YER012W	STO1	P34160	861 aa	Known RBP	4.65	□□□□□ -1.67
PRE1	YER012W	TRZ1	P36159	838 aa	Predicted RBP	4.65	□□□□□ -1.67
PRE1	YER012W	MIP6	P38760	659 aa	Known RBP	4.65	□□□□□ -1.67
PRE1	YER012W	RPN10	P38886	268 aa	Known RBP	4.65	□□□□□ -1.67
PRE1	YER012W	CHZ1	P40019	153 aa	Predicted RBP	4.65	□□□□□ -1.67
PRE1	YER012W	YNL195C	P40168	261 aa		4.65	□□□□□ -1.67
PRE1	YER012W	UBC9	P50623	157 aa	Predicted RBP	4.65	□□□□□ -1.67
PRE1	YER012W	YAP1802	P53309	568 aa		4.65	□□□□□ -1.67
PRE1	YER012W	LEE1	Q02799	301 aa	Known RBP	4.65	□□□□□ -1.67
PRE1	YER012W	THI7	Q05998	598 aa		4.65	□□□□□ -1.67
PRE1	YER012W	USV1	Q12132	391 aa		4.65	□□□□□ -1.67
PRE1	YER012W	YRF1-1	P0CX20	1796 aa		4.65	□□□□□ -1.67
PRE1	YER012W	YRF1-5	P0CX21	1796 aa		4.65	□□□□□ -1.67
PRE1	YER012W	YRF1-8	P0CX22	1796 aa		4.65	□□□□□ -1.67
PRE1	YER012W	SPO11	P23179	398 aa		4.64	□□□□□ -1.67
PRE1	YER012W	CTR1	P49573	406 aa		4.64	□□□□□ -1.67
PRE1	YER012W	COX18	P53239	316 aa		4.64	□□□□□ -1.67
PRE1	YER012W	FHN1	P53279	174 aa		4.64	□□□□□ -1.67
PRE1	YER012W	RPN7	Q06103	429 aa	Known RBP	4.64	□□□□□ -1.67
PRE1	YER012W	ECM3	Q99252	613 aa		4.64	□□□□□ -1.67
PRE1	YER012W	RKR1	Q04781	1562 aa		4.63	□□□□□ -1.67
PRE1	YER012W	RNR1	P21524	888 aa	Known RBP	4.63	□□□□□ -1.67
PRE1	YER012W	GLG1	P36143	616 aa		4.63	□□□□□ -1.67
PRE1	YER012W	ARP4	P80428	489 aa		4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-JR2	P47100	1755 aa	Known RBP	4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-ER2	Q03619	1755 aa		4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-MR1	Q04214	1755 aa		4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-MR2	Q04670	1755 aa	Known RBP	4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-LR1	Q12088	1755 aa	Known RBP	4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-NL1	Q12112	1755 aa		4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-GR1	Q12141	1755 aa		4.63	□□□□□ -1.67
PRE1	YER012W	TY1B-BL	Q12490	1755 aa		4.63	□□□□□ -1.67
PRE1	YER012W	PAN1	P32521	1480 aa		4.62	□□□□□ -1.67
PRE1	YER012W	SET3	P36124	751 aa		4.62	□□□□□ -1.67
PRE1	YER012W	APT2	P36973	181 aa		4.62	□□□□□ -1.67
PRE1	YER012W	NUP82	P40368	713 aa		4.62	□□□□□ -1.67
PRE1	YER012W	CAF16	P43569	289 aa		4.62	□□□□□ -1.67
PRE1	YER012W	SNP1	Q00916	300 aa	Predicted RBP	4.62	□□□□□ -1.67
PRE1	YER012W	MCM21	Q06675	368 aa		4.62	□□□□□ -1.67
PRE1	YER012W	ZRT2	Q12436	422 aa		4.62	□□□□□ -1.67
PRE1	YER012W	MDM12	Q92328	271 aa		4.62	□□□□□ -1.67
PRE1	YER012W	RAD18	P10862	487 aa		4.61	□□□□□ -1.67
PRE1	YER012W	THR1	P17423	357 aa	Known RBP	4.61	□□□□□ -1.67
PRE1	YER012W	ARG2	P40360	574 aa		4.61	□□□□□ -1.67
PRE1	YER012W	BDH2	P39713	417 aa		4.6	□□□□□ -1.67
PRE1	YER012W	AIM14	P53109	570 aa		4.6	□□□□□ -1.67
PRE1	YER012W	ATG4	P53867	494 aa		4.6	□□□□□ -1.67
PRE1	YER012W	APM1	Q00776	475 aa	Predicted RBP	4.6	□□□□□ -1.67
PRE1	YER012W	RPN4	Q03465	531 aa		4.6	□□□□□ -1.67
PRE1	YER012W	NHX1	Q04121	633 aa		4.6	□□□□□ -1.67
PRE1	YER012W	MET5	P47169	1442 aa		4.6	□□□□□ -1.67
PRE1	YER012W	TOP2	P06786	1428 aa	Known RBP	4.59	□□□□□ -1.67
PRE1	YER012W	SRD1	P09007	221 aa		4.59	□□□□□ -1.67
PRE1	YER012W	HSL7	P38274	827 aa		4.59	□□□□□ -1.67
PRE1	YER012W	CRP1	P38845	465 aa	Known RBP	4.59	□□□□□ -1.67
PRE1	YER012W	YEL020C	P39994	560 aa		4.59	□□□□□ -1.67
PRE1	YER012W	BUD6	P41697	788 aa		4.59	□□□□□ -1.67
PRE1	YER012W	NOP9	P47077	666 aa	Known RBP	4.59	□□□□□ -1.67
PRE1	YER012W	PCL10	P53124	433 aa		4.59	□□□□□ -1.67
PRE1	YER012W	YNL162W-A	Q3E7A8	72 aa		4.59	□□□□□ -1.67
PRE1	YER012W	CCR4	P31384	837 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 129.2 ms