RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 LPIN2Q92539 896 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 TBC1D32Q96NH3 1257 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 CRKLP46109 303 aaKnown RBP10.67□□□□□ -0.7
GGA3-223ENST00000621870 RBM25P49756 843 aaKnown RBP10.67□□□□□ -0.7
GGA3-223ENST00000621870 ZYXQ15942 572 aaKnown RBP10.67□□□□□ -0.7
GGA3-223ENST00000621870 ENOX2Q16206 610 aaKnown RBP10.66□□□□□ -0.7
GGA3-223ENST00000621870 VSIG10Q8N0Z9 540 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 FLAD1Q8NFF5 587 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 VTI1AQ96AJ9 217 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 LUC7LQ9NQ29 371 aaKnown RBP10.66□□□□□ -0.7
GGA3-223ENST00000621870 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.66□□□□□ -0.72e-6■□□□□ 11
GGA3-223ENST00000621870 GTF2IP78347 998 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 CCDC178Q5BJE1 867 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 NLGN1Q8N2Q7 840 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 WDR66Q8TBY9 1149 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 CALML4Q96GE6 196 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 ARMT1Q9H993 441 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 KDM5DQ9BY66 1539 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 ISM2Q6H9L7 571 aa10.66□□□□□ -0.7
GGA3-223ENST00000621870 AATFQ9NY61 560 aaKnown RBP eCLIP10.66□□□□□ -0.7
GGA3-223ENST00000621870 SPATA31E1Q6ZUB1 1445 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 CHMLP26374 656 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 ALDH1B1P30837 517 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 TRAF1Q13077 416 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 GPS2Q13227 327 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 PPP4R3BQ5MIZ7 849 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 NIM1KQ8IY84 436 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 SMARCC2Q8TAQ2 1214 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 USP44Q9H0E7 712 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 CCDC171Q6TFL3 1326 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.65□□□□□ -0.7
GGA3-223ENST00000621870 CPA1P15085 419 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 APOBRQ0VD83 1088 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 TCERG1LQ5VWI1 586 aa10.65□□□□□ -0.7
GGA3-223ENST00000621870 PROSER3Q2NL68 480 aa10.65□□□□□ -0.71
GGA3-223ENST00000621870 CREB3L3Q68CJ9 461 aa10.65□□□□□ -0.71
GGA3-223ENST00000621870 UNC5CLQ8IV45 518 aa10.65□□□□□ -0.71
GGA3-223ENST00000621870 EDC3Q96F86 508 aaKnown RBP10.65□□□□□ -0.71
GGA3-223ENST00000621870 ZCCHC11Q5TAX3 1644 aaKnown RBP10.65□□□□□ -0.71
GGA3-223ENST00000621870 CFAP74Q9C0B2 1584 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 USP6P35125 1406 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 SMTNL1A8MU46 457 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 B4E1Z4 1266 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 GPAA1O43292 621 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 ZAP70P43403 619 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 PRAMEF22A3QJZ6 481 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 SP4Q02446 784 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 MFSD14BQ5SR56 506 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 C2CD5Q86YS7 1000 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 CCDC148Q8NFR7 591 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 TNPO1Q92973 898 aaKnown RBP10.64□□□□□ -0.71
GGA3-223ENST00000621870 SPATA31A3Q5VYP0 1347 aa10.64□□□□□ -0.71
GGA3-223ENST00000621870 CBFA2T2O43439 604 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 PDE6BP35913 854 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 CTSWP56202 376 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 KIAA0825Q8IV33 1275 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 APPBP2Q92624 585 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 IGSF1Q8N6C5 1336 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 SPDYE3A6NKU9 549 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 SSR1P43307 286 aaKnown RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 GYG1P46976 350 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 DLGAP5Q15398 846 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 ARHGAP27Q6ZUM4 889 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 DHX32Q7L7V1 743 aaKnown RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 FAM227BQ96M60 508 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 RUFY1Q96T51 708 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 ANO10Q9NW15 660 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 PRDM15P57071 1507 aaPredicted RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 ANAPC15P60006 121 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 HSP90AA2PQ14568 343 aaPredicted RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 DOK7Q18PE1 504 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 EAPPQ56P03 285 aaPredicted RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 MAPKAPK5Q8IW41 473 aa10.63□□□□□ -0.71
GGA3-223ENST00000621870 MPHOSPH6Q99547 160 aaKnown RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 ATF5Q9Y2D1 282 aaPredicted RBP10.63□□□□□ -0.71
GGA3-223ENST00000621870 CCDC181Q5TID7 509 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 KBTBD3Q8NAB2 608 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 TTF2Q9UNY4 1162 aaKnown RBP10.62□□□□□ -0.71
GGA3-223ENST00000621870 MARCKSP29966 332 aaPredicted RBP10.62□□□□□ -0.71
GGA3-223ENST00000621870 RDXP35241 583 aaKnown RBP10.62□□□□□ -0.71
GGA3-223ENST00000621870 GIGYF2Q6Y7W6 1299 aaKnown RBP10.62□□□□□ -0.71
GGA3-223ENST00000621870 SYCP3Q8IZU3 236 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 TMEM87AQ8NBN3 555 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 TSG101Q99816 390 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 H7C1D1 291 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 ZBTB38Q8NAP3 1195 aaPredicted RBP10.62□□□□□ -0.71
GGA3-223ENST00000621870 PIGBQ92521 554 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 GPCPD1Q9NPB8 672 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 PICK1Q9NRD5 415 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 AFF2P51816 1311 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 HECW2Q9P2P5 1572 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 KIF20AO95235 890 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 CALM1P0DP23 149 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 CALM2P0DP24 149 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 CALM3P0DP25 149 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 IL6STP40189 918 aaPredicted RBP10.62□□□□□ -0.71
GGA3-223ENST00000621870 CCDC102BQ68D86 513 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 CACNA2D4Q7Z3S7 1137 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 SUPT20HQ8NEM7 779 aa10.62□□□□□ -0.71
GGA3-223ENST00000621870 GRPEL1Q9HAV7 217 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms