RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SALL1Q9NSC2 1324 aa26.83■■□□□ 1.88
VPS53-211ENST00000571805 TRIM28Q13263 835 aaKnown RBP26.83■■□□□ 1.88
VPS53-211ENST00000571805 ANO6Q4KMQ2 910 aa26.83■■□□□ 1.88
VPS53-211ENST00000571805 CBX8Q9HC52 389 aa26.83■■□□□ 1.88
VPS53-211ENST00000571805 HSPA2P54652 639 aa26.82■■□□□ 1.88
VPS53-211ENST00000571805 CCDC57Q2TAC2 916 aa26.82■■□□□ 1.88
VPS53-211ENST00000571805 ZNF274Q96GC6 653 aaPredicted RBP26.82■■□□□ 1.88
VPS53-211ENST00000571805 FBXO3Q9UK99 471 aa26.82■■□□□ 1.88
VPS53-211ENST00000571805 PDIA3P30101 505 aaKnown RBP26.82■■□□□ 1.88
VPS53-211ENST00000571805 CCT2P78371 535 aaKnown RBP26.82■■□□□ 1.88
VPS53-211ENST00000571805 TTLL5Q6EMB2 1281 aa26.82■■□□□ 1.88
VPS53-211ENST00000571805 C17orf53Q8N3J3 647 aaPredicted RBP26.82■■□□□ 1.88
VPS53-211ENST00000571805 KCNF1Q9H3M0 494 aa26.82■■□□□ 1.88
VPS53-211ENST00000571805 TOGARAM1Q9Y4F4 1720 aa26.81■■□□□ 1.88
VPS53-211ENST00000571805 ADORA1P30542 326 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 FBXL16Q8N461 479 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 XAGE2Q96GT9 111 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 NCOA5Q9HCD5 579 aaKnown RBP26.8■■□□□ 1.88
VPS53-211ENST00000571805 RCOR1Q9UKL0 485 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 FOXP2O15409 715 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 TPM3P06753 285 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 FKBP4Q02790 459 aaKnown RBP eCLIP26.8■■□□□ 1.88
VPS53-211ENST00000571805 NWD2Q9ULI1 1742 aa26.8■■□□□ 1.88
VPS53-211ENST00000571805 CCDC158Q5M9N0 1113 aa26.79■■□□□ 1.88
VPS53-211ENST00000571805 CHST3Q7LGC8 479 aa26.79■■□□□ 1.88
VPS53-211ENST00000571805 AKAP2Q9Y2D5 859 aa26.79■■□□□ 1.88
VPS53-211ENST00000571805 PLA2G12BQ9BX93 195 aa26.79■■□□□ 1.88
VPS53-211ENST00000571805 PCCAP05165 728 aaPredicted RBP26.78■■□□□ 1.88
VPS53-211ENST00000571805 EVCP57679 992 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 SPC24Q8NBT2 197 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 UBE2Q2Q8WVN8 375 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 KIF3AQ9Y496 699 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 DYNC1I1O14576 645 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 CSF1RP07333 972 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 TTC39AQ5SRH9 613 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 KIAA1524Q8TCG1 905 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 PDCL3Q9H2J4 239 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 ABCA3Q99758 1704 aa26.78■■□□□ 1.88
VPS53-211ENST00000571805 CEBPZQ03701 1054 aaKnown RBP26.77■■□□□ 1.88
VPS53-211ENST00000571805 FAM89AQ96GI7 184 aa26.77■■□□□ 1.88
VPS53-211ENST00000571805 FOSBP53539 338 aa26.77■■□□□ 1.88
VPS53-211ENST00000571805 RBM10P98175 930 aaKnown RBP26.77■■□□□ 1.88
VPS53-211ENST00000571805 SCARF1Q14162 830 aa26.77■■□□□ 1.88
VPS53-211ENST00000571805 TDRD7Q8NHU6 1098 aaKnown RBP26.77■■□□□ 1.88
VPS53-211ENST00000571805 FTOQ9C0B1 505 aaKnown RBP eCLIP26.77■■□□□ 1.88
VPS53-211ENST00000571805 LRRFIP1Q32MZ4 808 aaKnown RBP26.76■■□□□ 1.87
VPS53-211ENST00000571805 DNTTIP2Q5QJE6 756 aaKnown RBP26.76■■□□□ 1.87
VPS53-211ENST00000571805 GORABQ5T7V8 394 aa26.76■■□□□ 1.87
VPS53-211ENST00000571805 STRN4Q9NRL3 753 aa26.76■■□□□ 1.87
VPS53-211ENST00000571805 TMOD3Q9NYL9 352 aa26.76■■□□□ 1.87
VPS53-211ENST00000571805 GOLGA6L6A8MZA4 724 aa26.76■■□□□ 1.87
VPS53-211ENST00000571805 ZFYP08048 801 aaPredicted RBP26.76■■□□□ 1.87
VPS53-211ENST00000571805 ATL3Q6DD88 541 aa26.75■■□□□ 1.87
VPS53-211ENST00000571805 CCDC85AQ96PX6 553 aaPredicted RBP26.75■■□□□ 1.87
VPS53-211ENST00000571805 USP28Q96RU2 1077 aa26.75■■□□□ 1.87
VPS53-211ENST00000571805 CTNNA3Q9UI47 895 aa26.75■■□□□ 1.87
VPS53-211ENST00000571805 PYCARDQ9ULZ3 195 aa26.75■■□□□ 1.87
VPS53-211ENST00000571805 FDPSP14324 419 aaKnown RBP26.75■■□□□ 1.87
VPS53-211ENST00000571805 ILDR1Q86SU0 546 aaPredicted RBP26.75■■□□□ 1.87
VPS53-211ENST00000571805 ZBTB38Q8NAP3 1195 aaPredicted RBP26.75■■□□□ 1.87
VPS53-211ENST00000571805 ZNF330Q9Y3S2 320 aaPredicted RBP26.75■■□□□ 1.87
VPS53-211ENST00000571805 DNAJC10Q8IXB1 793 aa26.74■■□□□ 1.87
VPS53-211ENST00000571805 DNAJC25Q9H1X3 360 aa26.74■■□□□ 1.87
VPS53-211ENST00000571805 GPHNQ9NQX3 736 aaPredicted RBP26.74■■□□□ 1.87
VPS53-211ENST00000571805 NAP1L2Q9ULW6 460 aaPredicted RBP26.74■■□□□ 1.87
VPS53-211ENST00000571805 ZAP70P43403 619 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 WASHC4Q2M389 1173 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 VSIG10Q8N0Z9 540 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 SLAIN2Q9P270 581 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 ASAP1Q9ULH1 1129 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 CARMIL3Q8ND23 1372 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 PPFIA3O75145 1194 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 FGAP02671 866 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 ZNF165P49910 485 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 CCAR1Q8IX12 1150 aaKnown RBP26.73■■□□□ 1.87
VPS53-211ENST00000571805 MYRIPQ8NFW9 859 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 CHMP4CQ96CF2 233 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 TEX13AQ9BXU3 409 aaPredicted RBP26.73■■□□□ 1.87
VPS53-211ENST00000571805 GOLPH3LQ9H4A5 285 aa26.73■■□□□ 1.87
VPS53-211ENST00000571805 IFIT5Q13325 482 aaKnown RBP26.72■■□□□ 1.87
VPS53-211ENST00000571805 KIF6Q6ZMV9 814 aa26.72■■□□□ 1.87
VPS53-211ENST00000571805 PLA2G4DQ86XP0 818 aa26.72■■□□□ 1.87
VPS53-211ENST00000571805 PRIMPOLQ96LW4 560 aa26.72■■□□□ 1.87
VPS53-211ENST00000571805 ZNF396Q96N95 335 aaPredicted RBP26.72■■□□□ 1.87
VPS53-211ENST00000571805 ABCC12Q96J65 1359 aa26.72■■□□□ 1.87
VPS53-211ENST00000571805 SNW1Q13573 536 aaKnown RBP26.72■■□□□ 1.87
VPS53-211ENST00000571805 PIGBQ92521 554 aa26.72■■□□□ 1.87
VPS53-211ENST00000571805 CAVIN2O95810 425 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 EVA1CP58658 441 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 HAND2P61296 217 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 IMMTQ16891 758 aaKnown RBP26.71■■□□□ 1.87
VPS53-211ENST00000571805 APPBP2Q92624 585 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 PUS7LQ9H0K6 701 aaKnown RBP26.71■■□□□ 1.87
VPS53-211ENST00000571805 FAM13BQ9NYF5 915 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 GUCY1B3Q02153 619 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 SYNE4Q8N205 404 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 RIC1Q4ADV7 1423 aa26.71■■□□□ 1.87
VPS53-211ENST00000571805 MYH7P12883 1935 aa26.7■■□□□ 1.87
VPS53-211ENST00000571805 ZNF75DP51815 510 aa26.7■■□□□ 1.87
VPS53-211ENST00000571805 TAF7LQ5H9L4 462 aa26.7■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 307 ms