RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RIC3Q7Z5B4 369 aa21.07■□□□□ 0.96
CLK3-223ENST00000568488 ZBTB38Q8NAP3 1195 aaPredicted RBP21.07■□□□□ 0.96
CLK3-223ENST00000568488 JARID2Q92833 1246 aaPredicted RBP21.07■□□□□ 0.96
CLK3-223ENST00000568488 PTPN22Q9Y2R2 807 aa21.07■□□□□ 0.96
CLK3-223ENST00000568488 WTIPA6NIX2 430 aaPredicted RBP21.06■□□□□ 0.96
CLK3-223ENST00000568488 DACT2Q5SW24 774 aa21.06■□□□□ 0.96
CLK3-223ENST00000568488 LDLRAD1Q5T700 205 aa21.06■□□□□ 0.96
CLK3-223ENST00000568488 ANKRD18AQ8IVF6 992 aa21.06■□□□□ 0.96
CLK3-223ENST00000568488 CD99L2Q8TCZ2 262 aa21.06■□□□□ 0.96
CLK3-223ENST00000568488 ERO1AQ96HE7 468 aa21.06■□□□□ 0.96
CLK3-223ENST00000568488 COLQQ9Y215 455 aaPredicted RBP21.06■□□□□ 0.96
CLK3-223ENST00000568488 TMPOP42166 694 aaKnown RBP21.05■□□□□ 0.96
CLK3-223ENST00000568488 NEUROD2Q15784 382 aa21.05■□□□□ 0.96
CLK3-223ENST00000568488 APOBEC3FQ8IUX4 373 aaKnown RBP21.05■□□□□ 0.96
CLK3-223ENST00000568488 HYPKQ9NX55 129 aa21.05■□□□□ 0.96
CLK3-223ENST00000568488 TMEM106CQ9BVX2 250 aa21.04■□□□□ 0.96
CLK3-223ENST00000568488 EFCC1Q9HA90 598 aa21.04■□□□□ 0.96
CLK3-223ENST00000568488 PSME4Q14997 1843 aa21.04■□□□□ 0.96
CLK3-223ENST00000568488 CHL1O00533 1208 aa21.03■□□□□ 0.96
CLK3-223ENST00000568488 PDE8AO60658 829 aa21.03■□□□□ 0.96
CLK3-223ENST00000568488 MYD88Q99836 296 aa21.03■□□□□ 0.96
CLK3-223ENST00000568488 HTTP42858 3142 aa21.03■□□□□ 0.96
CLK3-223ENST00000568488 MYO3BQ8WXR4 1341 aa21.03■□□□□ 0.96
CLK3-223ENST00000568488 CENPFP49454 3210 aa21.02■□□□□ 0.96
CLK3-223ENST00000568488 IGF2BP3O00425 579 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLK3-223ENST00000568488 ARMC5Q96C12 935 aa21.02■□□□□ 0.96
CLK3-223ENST00000568488 GOLGA2Q08379 1002 aa21.01■□□□□ 0.95
CLK3-223ENST00000568488 STRIP1Q5VSL9 837 aa21.01■□□□□ 0.95
CLK3-223ENST00000568488 KIAA0825Q8IV33 1275 aa21.01■□□□□ 0.95
CLK3-223ENST00000568488 CLMNQ96JQ2 1002 aa21.01■□□□□ 0.95
CLK3-223ENST00000568488 KIAA0100Q14667 2235 aaKnown RBP21■□□□□ 0.95
CLK3-223ENST00000568488 ZBTB48P10074 688 aaPredicted RBP21■□□□□ 0.95
CLK3-223ENST00000568488 OTUD7BQ6GQQ9 843 aa21■□□□□ 0.95
CLK3-223ENST00000568488 WNK4Q96J92 1243 aa21■□□□□ 0.95
CLK3-223ENST00000568488 MED23Q9ULK4 1368 aa20.99■□□□□ 0.95
CLK3-223ENST00000568488 PCCAP05165 728 aaPredicted RBP20.99■□□□□ 0.95
CLK3-223ENST00000568488 HOXB7P09629 217 aa20.99■□□□□ 0.95
CLK3-223ENST00000568488 SP3Q02447 781 aa20.99■□□□□ 0.95
CLK3-223ENST00000568488 CRHR2Q13324 411 aa20.99■□□□□ 0.95
CLK3-223ENST00000568488 TTLL5Q6EMB2 1281 aa20.99■□□□□ 0.95
CLK3-223ENST00000568488 CDC5LQ99459 802 aaKnown RBP20.99■□□□□ 0.95
CLK3-223ENST00000568488 DEFB129Q9H1M3 183 aa20.99■□□□□ 0.95
CLK3-223ENST00000568488 PPP1R12BO60237 982 aaPredicted RBP20.98■□□□□ 0.95
CLK3-223ENST00000568488 CCDC191Q8NCU4 936 aa20.98■□□□□ 0.95
CLK3-223ENST00000568488 COA1Q9GZY4 146 aa20.98■□□□□ 0.95
CLK3-223ENST00000568488 CWC25Q9NXE8 425 aaPredicted RBP20.98■□□□□ 0.95
CLK3-223ENST00000568488 MINPP1Q9UNW1 487 aa20.98■□□□□ 0.95
CLK3-223ENST00000568488 MMP14P50281 582 aa20.97■□□□□ 0.95
CLK3-223ENST00000568488 CCT4P50991 539 aaKnown RBP20.97■□□□□ 0.95
CLK3-223ENST00000568488 SLC4A8Q2Y0W8 1093 aa20.97■□□□□ 0.95
CLK3-223ENST00000568488 DUSP27Q5VZP5 1158 aa20.97■□□□□ 0.95
CLK3-223ENST00000568488 PHAXQ9H814 394 aaKnown RBP20.97■□□□□ 0.95
CLK3-223ENST00000568488 MYCP01106 439 aaPredicted RBP20.96■□□□□ 0.95
CLK3-223ENST00000568488 TXNRD3Q86VQ6 643 aa20.96■□□□□ 0.95
CLK3-223ENST00000568488 CCDC146Q8IYE0 955 aa20.96■□□□□ 0.95
CLK3-223ENST00000568488 H0YGN5 161 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 GTF2IP78347 998 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 DLGAP5Q15398 846 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 MAP3K11Q16584 847 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 NBPF11Q86T75 865 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 ZNF333Q96JL9 665 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 BSDC1Q9NW68 430 aaPredicted RBP20.95■□□□□ 0.94
CLK3-223ENST00000568488 BRCA2P51587 3418 aa20.95■□□□□ 0.94
CLK3-223ENST00000568488 RBBP6Q7Z6E9 1792 aaKnown RBP20.95■□□□□ 0.94
CLK3-223ENST00000568488 CAP1Q01518 475 aa20.94■□□□□ 0.94
CLK3-223ENST00000568488 SLC9C1Q4G0N8 1177 aa20.94■□□□□ 0.94
CLK3-223ENST00000568488 ZBED3Q96IU2 234 aaPredicted RBP20.94■□□□□ 0.94
CLK3-223ENST00000568488 CTSWP56202 376 aa20.93■□□□□ 0.94
CLK3-223ENST00000568488 SUPT20HL1Q3ZLR7 823 aa20.93■□□□□ 0.94
CLK3-223ENST00000568488 PTPN18Q99952 460 aa20.93■□□□□ 0.94
CLK3-223ENST00000568488 GJA5P36382 358 aa20.92■□□□□ 0.94
CLK3-223ENST00000568488 ARHGEF6Q15052 776 aa20.92■□□□□ 0.94
CLK3-223ENST00000568488 GREM2Q9H772 168 aa20.92■□□□□ 0.94
CLK3-223ENST00000568488 TRIM35Q9UPQ4 493 aa20.92■□□□□ 0.94
CLK3-223ENST00000568488 LEMD3Q9Y2U8 911 aa20.92■□□□□ 0.94
CLK3-223ENST00000568488 PTCH2Q9Y6C5 1203 aa20.92■□□□□ 0.94
CLK3-223ENST00000568488 CLRN2A0PK11 232 aa20.91■□□□□ 0.94
CLK3-223ENST00000568488 DLL1O00548 723 aa20.91■□□□□ 0.94
CLK3-223ENST00000568488 COL1A1P02452 1464 aaPredicted RBP20.91■□□□□ 0.94
CLK3-223ENST00000568488 IREB2P48200 963 aaKnown RBP20.91■□□□□ 0.94
CLK3-223ENST00000568488 NBPF12Q5TAG4 269 aaPredicted RBP20.91■□□□□ 0.94
CLK3-223ENST00000568488 CHRDL2Q6WN34 429 aa20.91■□□□□ 0.94
CLK3-223ENST00000568488 TTLL11Q8NHH1 800 aa20.91■□□□□ 0.94
CLK3-223ENST00000568488 OTUD5Q96G74 571 aa20.91■□□□□ 0.94
CLK3-223ENST00000568488 VEZTQ9HBM0 779 aa20.91■□□□□ 0.94
CLK3-223ENST00000568488 ZNF804BA4D1E1 1349 aa20.9■□□□□ 0.94
CLK3-223ENST00000568488 UNCXA6NJT0 531 aa20.9■□□□□ 0.94
CLK3-223ENST00000568488 ELL2O00472 640 aaPredicted RBP20.9■□□□□ 0.94
CLK3-223ENST00000568488 KLRK1P26718 216 aa20.9■□□□□ 0.94
CLK3-223ENST00000568488 METTL22Q9BUU2 404 aaPredicted RBP20.9■□□□□ 0.94
CLK3-223ENST00000568488 PCDHAC2Q9Y5I4 1007 aa20.9■□□□□ 0.94
CLK3-223ENST00000568488 PPP2R3BQ9Y5P8 575 aa20.9■□□□□ 0.94
CLK3-223ENST00000568488 F8W031 263 aaPredicted RBP20.89■□□□□ 0.93
CLK3-223ENST00000568488 MYO1BO43795 1136 aa20.89■□□□□ 0.93
CLK3-223ENST00000568488 USP2O75604 605 aaPredicted RBP20.89■□□□□ 0.93
CLK3-223ENST00000568488 IGHMBP2P38935 993 aaKnown RBP20.89■□□□□ 0.93
CLK3-223ENST00000568488 ANKRD13AQ8IZ07 590 aa20.89■□□□□ 0.93
CLK3-223ENST00000568488 ELP3Q9H9T3 547 aa20.89■□□□□ 0.93
CLK3-223ENST00000568488 SSC5DA1L4H1 1573 aa20.89■□□□□ 0.93
CLK3-223ENST00000568488 SZT2Q5T011 3432 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms